View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_11 (Length: 426)
Name: NF16630_low_11
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 40458121 - 40458519
Alignment:
| Q |
20 |
aaggtttgacggttactagttctaatacccagcctactgtaacaacactcttatcatggagtcttcataaattacaattgcttttacgttcttttagaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40458121 |
aaggtttgacggttactagttctaatacccagcctactgtaacaacactcttatcatagagtcttcatagattacaattgcttttacgttcttttagaag |
40458220 |
T |
|
| Q |
120 |
acaatgatgtccttccatcaaaaattagtttgaatatattgccattgtcatttctcaaactgaagttggtaccatgcatatttccttcctctcacacgta |
219 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||||| ||||||| |
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| T |
40458221 |
acaatgatgtccttccatcaataattagtttgaatatattgccattgtcattgctcaaattgaagctggtaccatgcatagttccttcctc--acacgta |
40458318 |
T |
|
| Q |
220 |
tagaacagggagtatattatgagcatcaaggtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacag |
319 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458319 |
--gaacagggagtatattaggagcatcaaagtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaa |
40458416 |
T |
|
| Q |
320 |
ttatccaaatcaagaaaacaaactccctcctatccatatgacctcacacaaaccatcatatcccttatcacaatgttctcttattattttccatattctt |
419 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
40458417 |
ttatccaaatcaagaaaaccaactccctcctatccatatgacctcacaaaaaccatcatatcccttatcacaatgttctcttattatttctcatagtctt |
40458516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 43408791 - 43408393
Alignment:
| Q |
20 |
aaggtttgacggttactagttctaatacccagcctactgtaacaacactcttatcatggagtcttcataaattacaattgcttttacgttcttttagaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43408791 |
aaggtttgacggttactagttctaatacccagcctactgtaacaacactcttatcatagagtcttcatagattacaattgcttttacgttcttttagaag |
43408692 |
T |
|
| Q |
120 |
acaatgatgtccttccatcaaaaattagtttgaatatattgccattgtcatttctcaaactgaagttggtaccatgcatatttccttcctctcacacgta |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||||| ||||||| |
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| T |
43408691 |
acaatgatgtccttccatcaataattagtttgaatatattgccattgtcattgctcaaattgaagctggtaccatgcatagttccttcctc--acacgta |
43408594 |
T |
|
| Q |
220 |
tagaacagggagtatattatgagcatcaaggtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacag |
319 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43408593 |
--gaacagggagtatattaggagcatcaaagtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaa |
43408496 |
T |
|
| Q |
320 |
ttatccaaatcaagaaaacaaactccctcctatccatatgacctcacacaaaccatcatatcccttatcacaatgttctcttattattttccatattctt |
419 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
43408495 |
ttatccaaatcaagaaaaccaactccctcctatccatatgacctcacaaaaaccatcatatcccttatcacaatgttctcttattatttctcatagtctt |
43408396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 37668172 - 37667784
Alignment:
| Q |
20 |
aaggtttgacggttactagttctaatacccagcctactgtaacaacactcttatcatggagtcttcataaattacaattgcttttacgttcttttagaag |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
37668172 |
aaggttagacggttactagttctaatacccagcctactgtaacaacactcttatcatggagtcttcatagattgcaattgcttttacgttcttttagaag |
37668073 |
T |
|
| Q |
120 |
acaatgatgtccttccatcaaaaattagtttgaatatattgccattgtcatttctcaaactgaagttggtaccatgcatatttccttcctctcacacgta |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
37668072 |
acaatgatgtccttccatcaataattagtttgaatatattcccattgtcattgct------------ggtaccatgcatatttccttcctctcacacgta |
37667985 |
T |
|
| Q |
220 |
tagaacagggagtatattatgagcatcaaggtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37667984 |
--gaacagggagtatattatgagcatcaaggtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaa |
37667887 |
T |
|
| Q |
320 |
ttatccaaatcaagaaaacaaactccctcctatccatatgacctcacacaaaccatcatatcccttatcacaatgttctcttattattttccatattctt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
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|
| T |
37667886 |
ttatccaaatcaagaaaacaaactccctcctatccatatgacctcacgcaaaccatcatatcccttatcacaatgttctcctattattttctatagtctt |
37667787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 25004334 - 25004433
Alignment:
| Q |
20 |
aaggtttgacggttactagttctaatacccagcctactgtaacaacactcttatcatggagtcttcataaattacaattgcttttacgttcttttagaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |||||| |||| |||||||||||| |
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| T |
25004334 |
aaggtttgacggttactagttctaatacccagcctac-gtaaccacactcttatcatggattcttcataaatcacaatttctttggttttcttttagaag |
25004432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 16474468 - 16474567
Alignment:
| Q |
20 |
aaggtttgacggttactagttctaatacccagcctactgtaacaacactcttatcatggagtcttcataaattacaattgcttttacgttcttttagaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |||||| |||| |||||||||||| |
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|
| T |
16474468 |
aaggtttgacggttactagttctaatacccagcctac-gtaaccacactcttatcatggattcttcataaatcacaatttctttggttttcttttagaag |
16474566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 11968540 - 11968508
Alignment:
| Q |
382 |
ccttatcacaatgttctcttattattttccata |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11968540 |
ccttatcacaatgttctcttattattttccata |
11968508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 22403195 - 22403242
Alignment:
| Q |
234 |
tattatgagcatcaaggtattctagttccttgaattcattagtttggt |
281 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
22403195 |
tattatgaccatcaaggtattctaattccttgaattcattagtttggt |
22403242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 22403246 - 22403344
Alignment:
| Q |
306 |
ttacatcaatacagttatccaaatcaagaaaacaaactccctcctatccatatgacctcacacaaaccatcatatcccttatcacaatgttctcttatta |
405 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |||||| | |||||| | |||| |||| | ||||||||||| || |||||||||||| |
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|
| T |
22403246 |
ttacattaatacaattatccaaatcaagaaaacaaaccccctcccacgcatatggcttcacgcaaaac----catcccttatcaaaaagttctcttatta |
22403341 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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