View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_13 (Length: 420)
Name: NF16630_low_13
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 51933016 - 51932613
Alignment:
| Q |
1 |
aaaaattagacaggttatggataagaaacctcaagttcaagaggttgtagacaccgaggaaaagaagaagaaaatgcaaaagctaattaatgattaccaa |
100 |
Q |
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| T |
51933016 |
aaaaattagacaggttatggataagaaacctcaagttcaagaggttgtagacaccgaggaaaagaagaagaaaatgcaaaagctaattaatgattaccaa |
51932917 |
T |
|
| Q |
101 |
cttgttgtggaagaagaggatcctaattggcctcaagatgctgatggctggggatttagccttgggcagtttttcgacaagattaccatccaaaataaaa |
200 |
Q |
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| T |
51932916 |
cttgttgtggaagaagaggatcctaattggcctcaagatgctgatggctggggatttagccttgggcagtttttcgacaagattaccatccaaaataaaa |
51932817 |
T |
|
| Q |
201 |
agaaggaagataatgatgatgccgaggacgatgatgttgatgatgataagccaatagtgtggcaagatgataattacattcgtcctatcaaagatatgaa |
300 |
Q |
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| T |
51932816 |
agaaggaagataatgatgatgccgaggacgatgatgttgatgatgataagccaatagtgtggcaagatgataattacattcgtcctatcaaagatatgaa |
51932717 |
T |
|
| Q |
301 |
ggctgaggaatgggatgaaactgtgttcaaagacattagtcctttgattattcttgtgcacaatcgttatagaaggtttgttctacttttctatgttcta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51932716 |
ggctgaggaatgggatgaaactgtgttcaaagacattagtcctttgattattcttgtgcacaatcgttatagaaggtttgttctacttttctatgctcta |
51932617 |
T |
|
| Q |
401 |
tagt |
404 |
Q |
| |
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|||| |
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| T |
51932616 |
tagt |
51932613 |
T |
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