View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_17 (Length: 359)
Name: NF16630_low_17
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 18515149 - 18514826
Alignment:
| Q |
9 |
gattatactttaaaagttgtccatgaggtcttgcctctagcaaatccaaataccaatcgtgtaaaccaaatttgttactaccaacactgaagtatatatt |
108 |
Q |
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| T |
18515149 |
gattatactttaaaagttgtccatgaggtcttgcctctagcaaatccaaataccaatcgtgtaaaccaaatttgttactaccaacactgaagtatatatt |
18515050 |
T |
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| Q |
109 |
tccatctgatgcttctattacatcatcggcaaacctggttccatcataagaaaaatcttagatgtgacttatgaattcaatagctagtgcatattttcaa |
208 |
Q |
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| T |
18515049 |
tccatctgatgcttctattacatcatcggcaaacctggtccgatcataagaaaaatctcagatgtgacttatgaatttaatagctagtgcatattttcaa |
18514950 |
T |
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| Q |
209 |
gaaaattaatagtgaatagtatatatatggaccaattggcagtgtatttgtgaccatagtaggcttccttaatgaacatacactaggagacggaccaaag |
308 |
Q |
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| T |
18514949 |
gaaaattaatagtgaatagtatatatatggaccaattggcagtgtatttgtgaccatagtaggcttccttaatgaacatacactaggagaaggaccaaag |
18514850 |
T |
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| Q |
309 |
tgagtaacg-tttagacatgttta |
331 |
Q |
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| T |
18514849 |
tgagtaacgttttagacatgttta |
18514826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 18490497 - 18490357
Alignment:
| Q |
9 |
gattatactttaaaagttgtccatgaggtcttgcctctagcaaatccaaataccaatcgtgtaaaccaaatttgttactaccaacactgaagtatatatt |
108 |
Q |
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| T |
18490497 |
gattgtaccttaaaagttgtccatgtgatcttgcctcaagcacatccaaataccaattgtgcataccaaatttggtacttggaacactgaaataaatatt |
18490398 |
T |
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| Q |
109 |
tccatctgatgcttctattacatcatcggcaaacctggttc |
149 |
Q |
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| T |
18490397 |
tccatctgatgcttctattacatcatctgcaaacctggttc |
18490357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 18508998 - 18508866
Alignment:
| Q |
9 |
gattatactttaaaagttgtccatgaggtcttgcctctagcaaatccaaataccaatcgtgtaaaccaaatttgttactaccaacactgaagtatatatt |
108 |
Q |
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|||| ||| |||||||||||||||| ||||||||||| |||| ||| | |||||||| |||||||||||||||| |||| |||||||| |||||||| |
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| T |
18508998 |
gattgtaccttaaaagttgtccatgtggtcttgcctcaagcacatctagataccaattgtgtaaaccaaatttggtacttggtacactgaaatatatatt |
18508899 |
T |
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| Q |
109 |
tccatctgatgcttctattacatcatcggcaaa |
141 |
Q |
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| T |
18508898 |
tccatctgatgcttctattatatcatctgcaaa |
18508866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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