View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_18 (Length: 344)
Name: NF16630_low_18
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_18 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 176 - 344
Target Start/End: Original strand, 52719895 - 52720062
Alignment:
| Q |
176 |
gagaccaaaacatataacggagaaggacttaagagatctaaacgaattttttattacttgactaaagcgatactnnnnnnnnnnncgttaagggaccaaa |
275 |
Q |
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| T |
52719895 |
gagaccaaaacatataacggagaaggacttaagagatctaaacggactttttattacttgactaaagcaatactaaaaaaaaaag-gttaagggaccaaa |
52719993 |
T |
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| Q |
276 |
acaacattttagcctataattaatacccttaatgcttgtgaaacctccatttgttaaccaagtttgtgc |
344 |
Q |
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| T |
52719994 |
acaacattttagcctataattaataccctaaatgcctgtgaagcctccatttgttaaccaagtttgtgc |
52720062 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 52719608 - 52719663
Alignment:
| Q |
17 |
aatttatgggtttgagaattttttaattttattctgggtatatttggaaaacatta |
72 |
Q |
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| T |
52719608 |
aatttatgggtttgagaattttttaattttattctgggtatatttggaaaacatta |
52719663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 52719723 - 52719763
Alignment:
| Q |
135 |
caatatgagatggtgatggtgtactattacttacaatagat |
175 |
Q |
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| T |
52719723 |
caatatgagatggtgatggtgtactattacttacaatagat |
52719763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 52711144 - 52711194
Alignment:
| Q |
294 |
attaatacccttaatgcttgtgaaacctccatttgttaaccaagtttgtgc |
344 |
Q |
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| T |
52711144 |
attaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgc |
52711194 |
T |
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