View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_22 (Length: 326)
Name: NF16630_low_22
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 37 - 310
Target Start/End: Original strand, 31264421 - 31264694
Alignment:
| Q |
37 |
gcttgtatgagcaattaatataggagttttacaaaagggaggttgtaagtaaatgcagaatgggaaagaaataggtcccatttaaatggaccccaatggg |
136 |
Q |
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| T |
31264421 |
gcttgtatgagcaattaatataggagttttacaaaagggaggttgtaagtaaatgcagaatgggtaagaaataggtcccatttaaatggaccccaatggg |
31264520 |
T |
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| Q |
137 |
tctttttggagctttcttaagtaaagtgtatgggtactttccataatctaaaattctcattgcctatatcaagttactaatgagaggttgaaagcagctt |
236 |
Q |
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| T |
31264521 |
tctttttggagctttcttaagtaaagtgtatgggtactttccataatctaaaattctcattgcctatatcaagttactaatgagaggttgaaagcagctt |
31264620 |
T |
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| Q |
237 |
ccaatattccgagattaattatgcaaacatgtttcaatctaggttattagggttacctaaaccatgtcttatgt |
310 |
Q |
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| T |
31264621 |
ccaatattccgagattaattatgcagacatgtttcaatctaggttattagggttacctaaaccatgtcttatgt |
31264694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 31265374 - 31265491
Alignment:
| Q |
154 |
taagtaaagtgtatgggtactttccataatctaaaattctcattgcctatatcaagttactaatgagaggttgaaagcagcttccaatattccgagatta |
253 |
Q |
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| T |
31265374 |
taagtagagtgaatgggtactttccacaatctaaaatttccattgtccacatcaagttactaacgaaaggttgaaagccacttccaatatgccaagatta |
31265473 |
T |
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| Q |
254 |
attatgcaaacatgtttc |
271 |
Q |
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| T |
31265474 |
ataatgcaaacatgtttc |
31265491 |
T |
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