View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_23 (Length: 325)
Name: NF16630_low_23
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 39306415 - 39306109
Alignment:
| Q |
1 |
acagatgttattttggagctgctggccattagcttggatgttgatcgatcatactataaaaagttttttgaagatgcagaaactatgatgaggtgcaact |
100 |
Q |
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| T |
39306415 |
acagatgttattttggagctgctggccattagcttggatgttgatcgatcatactataaaaagttttttgaagatgcagaaactatgatgaggtgcaact |
39306316 |
T |
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| Q |
101 |
cttacccaccttgcagtggcatccatgcaggtgcccttggcactggtcctcattgtgacccaacctcagtcaccattctttttcaagatcaagttggagg |
200 |
Q |
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| T |
39306315 |
cttacccaccttgcagtggcatccatgcaggtgcccttggcactggtcctcattgtgacccaacctcagtcaccattctttttcaagatcaagttggagg |
39306216 |
T |
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| Q |
201 |
tctagaagcttttgtggataacaaatggcttggtattcgtcctcaacctaataactttgtcattaacattggggacactttcaaggtatgtatgaaatat |
300 |
Q |
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| T |
39306215 |
tctagaagcttttgtggataacaaatggcttggtattcgtcctcaacctaataactttgtcattaacattggggacactttcaaggtatgtattaaatat |
39306116 |
T |
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| Q |
301 |
ttatgat |
307 |
Q |
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||||||| |
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| T |
39306115 |
ttatgat |
39306109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 39315344 - 39315176
Alignment:
| Q |
64 |
ttttttgaagatgcagaaactatgatgaggtgcaactcttacccaccttgcagtggcatccatgcaggtgcccttggcactggtcctcattgtgacccaa |
163 |
Q |
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| T |
39315344 |
ttttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctcactggtgctcttggcaatggccctcattgtgacccaa |
39315245 |
T |
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| Q |
164 |
cctcagtcaccattctttttcaagatcaagttggaggtctagaagcttttgtggataacaaatggcttg |
232 |
Q |
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| T |
39315244 |
tctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttg |
39315176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 44114017 - 44113925
Alignment:
| Q |
136 |
cttggcactggtcctcattgtgacccaacctcagtcaccattctttttcaagatcaagttggaggtctagaagcttttgtggataacaaatgg |
228 |
Q |
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| T |
44114017 |
cttggtactggccctcactcagacccaacatcactaaccattcttcatcaagatcaagttggaggtcttgaagtttttgcagataataaatgg |
44113925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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