View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_25 (Length: 318)
Name: NF16630_low_25
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_25 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 115 - 318
Target Start/End: Complemental strand, 25866990 - 25866787
Alignment:
| Q |
115 |
ctaattaagacttatattttatttcacaaaaacttataatctgatttttcttgttaccatgatggttgaaaataacatttactgatacatatttcttgtt |
214 |
Q |
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| T |
25866990 |
ctaattaagacttatattttatttcacaaaaacttataatctgatttttcttgttaccatgatggttgtaaataacatttactgacatatatttcttgtt |
25866891 |
T |
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| Q |
215 |
acagtgtgttattgagtttgaagttgctataactaagttctcatttgatactccgctaaccaccaaactttactcacctttctgtgtgaggagtctcatt |
314 |
Q |
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| T |
25866890 |
acagcgtgttattgagtttgaagttgctataactaagttctcatttgatactcccccaacaaccaaactttactcacctttctgtgtgagaagtctcatt |
25866791 |
T |
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| Q |
315 |
ccat |
318 |
Q |
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|||| |
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| T |
25866790 |
ccat |
25866787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 318
Target Start/End: Complemental strand, 25868934 - 25868774
Alignment:
| Q |
159 |
tttttcttgttaccatgatggttgaaaataacatttactgatacatat---ttcttgttacagtgtgttattgagtttgaagttgctataactaagttct |
255 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||| || ||| | ||||| |||| ||||||||| ||||||| | || | |
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| T |
25868934 |
tttttcttgttaccattatggttgaaaataacatttactgacgcatataaaaaaaggtgacaatatgttactgaggttgaagttgatataactgaatttt |
25868835 |
T |
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| Q |
256 |
catttgatactccgctaaccaccaaactttactcacctttctgtgtgaggagtctcattccat |
318 |
Q |
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| T |
25868834 |
catttgatatt--tccaaccacataactttactcacctttctttgtgagaagtctcattccat |
25868774 |
T |
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