View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_26 (Length: 313)
Name: NF16630_low_26
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 1656652 - 1656952
Alignment:
| Q |
1 |
agaacaaaaaggaacaaatggaagcagagaatgttggccataatgttaagcaagggataagatcatgtgagaagtatatgaaattatatttgtgccacat |
100 |
Q |
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| T |
1656652 |
agaacaaaaaggaacaaatggaagcagagaatgttggccataatgttaagcaagggataagatcatgtgagaagtatatgaaattatatttgtgccacat |
1656751 |
T |
|
| Q |
101 |
at----atataatagatataactacagcatgtgagtgttgaatttgacaggtttagtcacaagatataaacaatagcagcatgtgagtgattttctgttt |
196 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1656752 |
atatatatataatagatataactacagcatgtgagtgttgaatttgacaggtttagtcacaagatataaacaatagcagcatgtgagtgattttctgttt |
1656851 |
T |
|
| Q |
197 |
gttacacgagattcagagaatgttgttccactattttatacattccaataagcaaagggttcaataaaataccttaccatgcaccaggaattgctccata |
296 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1656852 |
gttacatgagattcagagaatgttgttccactattttatacattccaataagcaaagggttcaataaaataccttaccatgcaccaggaactgctccata |
1656951 |
T |
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| Q |
297 |
g |
297 |
Q |
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| T |
1656952 |
g |
1656952 |
T |
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