View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16630_low_27 (Length: 306)

Name: NF16630_low_27
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16630_low_27
NF16630_low_27
[»] chr3 (1 HSPs)
chr3 (20-306)||(30300628-30300914)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 30300628 - 30300914
Alignment:
Q  20 cgatatatagagatccagtcagtagtcaactttgtttatgtttttatccttaacgtaatattttgattgagtgataagtaattccctcttataatgcttt 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30300628 cgatatatagagatccagtgagtagtcaactttgtttatgtttttatccttaacgtaatattttgattgagtgataagtaattccctcttataatgcttt 30300727  T
Q  120 tttccgtgtttaagttgtaaatgacaaaatgattctcttttgttagattcttgtgatattcaaaatcaaattctgtattcttatatgatgatttcacttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30300728 tttccgtgtttaagttgtaaatgacaaaatgattctcttttgttagattcttgtgatattcaaaatcaaattctgtattcttatatgatgatttcacttt 30300827  T
Q  220 tggagcagtcaattgattctggagaagtacaattgattttgactttaccactagaattgattctaacttgtatgttggttctgtgtt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30300828 tggagcagtcaattgattctggagaagtacaattgattttgactttaccactagaattgattctaacttgtatgttggttctgtgtt 30300914  T

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