View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_29 (Length: 302)
Name: NF16630_low_29
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 577052 - 577319
Alignment:
| Q |
14 |
agataagatggattcgaattcattgaaagtggcaaatgtaaaattccttgacagtggacaatttggatcacagttattgagttcagcaagccattactgt |
113 |
Q |
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| T |
577052 |
agataagatggattcaaattcattgaaagtggcaaatgtaaaattccttgacagtggacaatttggatcacagttattgagttcagcaagccattactgt |
577151 |
T |
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| Q |
114 |
agtcattttcatcatcatgcaagaaattgatgagtgcaccaaaaatgatgggatgacataaatgccttgtaaaagaaacaatattctttattgggcttga |
213 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
577152 |
agtcattttcatcatcatccaagaaattgatgagtgcaccaaaaatgatgggatgacataaatgccttgcaaaagaaacaatattctttattgggcttga |
577251 |
T |
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| Q |
214 |
atgctgggtcgattaaattaaagtgggtgggccatacacattaggttagtatatagcccctcactccca |
282 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
577252 |
atgctgggtcgatt-aattaaagtgggtgggccatacacattaggttagtatatagcccctcactccca |
577319 |
T |
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