View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_30 (Length: 296)
Name: NF16630_low_30
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 79414 - 79172
Alignment:
| Q |
12 |
cacagacataatataagagttaatattctaggttgttattactgaatagtctagtattttaattatggccacaacactatgctatagaaacaatataagt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
79414 |
cacacacataatataagagttaatattctaggttgttattactgaatatgctagtattttaattctggcaacaacactatgctatagaaacaatataagt |
79315 |
T |
|
| Q |
112 |
gtattcttcaattttgaacttgccaaaacatttgcattaaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaagt |
211 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
79314 |
gtattcttcaactttgaacttgccaaaacatttgcaataaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaagt |
79215 |
T |
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| Q |
212 |
atgtttttctaaatttccaaaagagtccgagtcctttcaactt |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
79214 |
atgtttttctaaatttccaaaagagtccgagtcctttcaactt |
79172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 2442576 - 2442330
Alignment:
| Q |
12 |
cacagacataatataagagttaatattctaggttgttattactgaatagtctagtattttaattatggccacaacactatgctatagaaacaatataagt |
111 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
2442576 |
cacacacacaatataagagttaatattctaggttgttattactgaataggctagtaatttaattatggcaacaacactatgctatataaataatataagt |
2442477 |
T |
|
| Q |
112 |
gtattcttcaattttgaacttgccaaaacatttgcattaaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaa-- |
209 |
Q |
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||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
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| T |
2442476 |
gtattcttcaactttcaacttgccaaaacatttgcattaatcctccaaaaaagaatattatcaccaaagcagaaccataacattttagtatgccacaata |
2442377 |
T |
|
| Q |
210 |
--gtatgtttttctaaatttccaaaagagtccgagtcctttcaactt |
254 |
Q |
| |
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|||| |||||||||||||||| ||| ||| ||| ||||||||||| |
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| T |
2442376 |
gggtatatttttctaaatttccataagggtctgagccctttcaactt |
2442330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 6301170 - 6301416
Alignment:
| Q |
12 |
cacagacataatataagagttaatattctaggttgttattactgaatagtctagtattttaattatggccacaacactatgctatagaaacaatataagt |
111 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
6301170 |
cacacacacaatataagagttaatattctaggttgttattactgaataggctagtaatttaattatggcaacaacactatgctatagaaataatataagt |
6301269 |
T |
|
| Q |
112 |
gtattcttcaattttgaacttgccaaaacatttgcattaaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaa-- |
209 |
Q |
| |
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| ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
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| T |
6301270 |
gcattcttcaactttcaacttgccaaaacatttgcattaatcctccaaaaaagaatattatcaccaaagcagaaccataacattttagtatgccacaata |
6301369 |
T |
|
| Q |
210 |
--gtatgtttttctaaatttccaaaagagtccgagtcctttcaactt |
254 |
Q |
| |
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|||| |||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
6301370 |
gggtatatttttctaaatttccagaagagtctgagccctttcaactt |
6301416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 6307980 - 6308226
Alignment:
| Q |
12 |
cacagacataatataagagttaatattctaggttgttattactgaatagtctagtattttaattatggccacaacactatgctatagaaacaatataagt |
111 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
6307980 |
cacacacacaatataagagttaatattctaggttgttattactgaataggctagtaatttaattatggcaacaacactatgctatataaataatataagt |
6308079 |
T |
|
| Q |
112 |
gtattcttcaattttgaacttgccaaaacatttgcattaaccctccaaaaaagaatattatcaccaaagcagaactataacattttactatgccgcaa-- |
209 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
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| T |
6308080 |
gtattcttcaactttcaacttgccaaaacatttgcattaatcctccaaaaaagaatattatcaccaaagcagaaccataacattttagtatgccacaata |
6308179 |
T |
|
| Q |
210 |
--gtatgtttttctaaatttccaaaagagtccgagtcctttcaactt |
254 |
Q |
| |
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|||| |||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
6308180 |
gggtatatttttctaaatttccagaagagtctgagccctttcaactt |
6308226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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