View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_33 (Length: 288)
Name: NF16630_low_33
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 27430237 - 27430512
Alignment:
| Q |
7 |
ctcctacaccatgaaatttcaacgagagctcaagcacattctaagcatcaatgtgtatttcaagatggggaaaattttgtaaaattctaacaaatgaaaa |
106 |
Q |
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| T |
27430237 |
ctcctacaccatgaaatttcaacgagagctcaagcacattctaagcatcaatgtgtatttcaagatggggaaaattttgtaaaattctaacaaaagaaaa |
27430336 |
T |
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| Q |
107 |
ttacattaattaatacttctagttttaagcagaaagtaatacggttccacaatatgtactcaaagtatctataccgtaagacttggtcaatttcaaaaat |
206 |
Q |
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| T |
27430337 |
ttacattaattaatacttctagttttaagcagaaagtaatacggttccacaatatgtactcgaagtatctatactgtaagacttggtcaatttcaaaaat |
27430436 |
T |
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| Q |
207 |
atcataatataattatttaccaaatccatttgtagaataaaatatggttgaacatactaatttattgcagaataat |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27430437 |
atcataatataattatttaccaaatccatttgtagaataaaatatggttgaacatactaatttattgcataataat |
27430512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 24490236 - 24490124
Alignment:
| Q |
14 |
accatgaaatttcaacgagagctcaagcacattctaagcatcaatgtgtatttcaagatggggaaaattttgt---aaaattctaacaaatgaaaattac |
110 |
Q |
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|||| ||||||||||| ||| |||||||||||||||||||| || ||||||||||| |||||||| || | ||||| |||||||||| ||||||| |
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| T |
24490236 |
accaagaaatttcaacaagatctcaagcacattctaagcatttataagtatttcaaga--gggaaaatattctctgaaaatcctaacaaatgcaaattac |
24490139 |
T |
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| Q |
111 |
attaattaatacttc |
125 |
Q |
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| T |
24490138 |
atttatcaatacttc |
24490124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 26029781 - 26029669
Alignment:
| Q |
7 |
ctcctacaccatgaaatttcaacgagagctcaagcacattctaagcatcaatgtgtatttcaagatggggaaaattttgtaaaattctaacaaatgaaaa |
106 |
Q |
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|||||||||||||| |||||||| |||||| |||||||| || |||| | | |||||||||| | ||| |||||| | |||||| |||| ||||| ||| |
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| T |
26029781 |
ctcctacaccatgagatttcaacaagagcttgagcacattttacgcattactttgtatttcaa-aagggaaaaattctctaaaatcctaaaaaatgtaaa |
26029683 |
T |
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| Q |
107 |
ttacattaattaat |
120 |
Q |
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|||||||| |||| |
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| T |
26029682 |
ctacattaactaat |
26029669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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