View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16630_low_35 (Length: 274)

Name: NF16630_low_35
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16630_low_35
NF16630_low_35
[»] chr2 (6 HSPs)
chr2 (1-259)||(44820135-44820391)
chr2 (4-259)||(10344588-10344841)
chr2 (119-259)||(42929991-42930126)
chr2 (93-206)||(22059108-22059220)
chr2 (4-56)||(42929925-42929978)
chr2 (211-259)||(42827714-42827762)
[»] chr1 (5 HSPs)
chr1 (4-259)||(42300819-42301074)
chr1 (68-259)||(52794070-52794265)
chr1 (68-154)||(9627400-9627490)
chr1 (93-209)||(31814715-31814830)
chr1 (4-52)||(52794279-52794328)
[»] chr6 (7 HSPs)
chr6 (4-259)||(12600259-12600513)
chr6 (4-259)||(20772661-20772922)
chr6 (93-209)||(7799172-7799287)
chr6 (94-209)||(19398262-19398376)
chr6 (188-259)||(843154-843220)
chr6 (211-259)||(19597591-19597639)
chr6 (211-259)||(19581195-19581243)
[»] chr5 (3 HSPs)
chr5 (4-259)||(13374130-13374385)
chr5 (117-204)||(9671281-9671367)
chr5 (4-56)||(9671379-9671432)
[»] chr4 (13 HSPs)
chr4 (74-259)||(55018872-55019058)
chr4 (74-259)||(38158135-38158321)
chr4 (117-259)||(23703439-23703576)
chr4 (117-259)||(35785529-35785666)
chr4 (117-259)||(7108008-7108145)
chr4 (4-56)||(23703376-23703429)
chr4 (188-259)||(4907099-4907165)
chr4 (188-259)||(4932968-4933034)
chr4 (188-259)||(29756630-29756696)
chr4 (4-56)||(7107942-7107995)
chr4 (4-56)||(35785677-35785730)
chr4 (4-56)||(38158066-38158119)
chr4 (4-56)||(55018803-55018856)
[»] scaffold0060 (2 HSPs)
scaffold0060 (117-259)||(12804-12941)
scaffold0060 (4-56)||(12740-12793)
[»] chr8 (3 HSPs)
chr8 (117-259)||(21143583-21143720)
chr8 (188-259)||(358947-359013)
chr8 (4-56)||(21143517-21143570)
[»] scaffold0129 (1 HSPs)
scaffold0129 (93-209)||(3202-3317)
[»] chr3 (1 HSPs)
chr3 (188-259)||(24612636-24612702)
[»] chr7 (1 HSPs)
chr7 (211-259)||(41385421-41385469)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 44820391 - 44820135
Alignment:
Q  1 ttaactatttatgtatggtaattgtagcaatctgaaagaataagagggaattgtggggnnnnnnnnggggatgaaaaagatgtattcttcctttattatc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||            |||| ||||||||||||||||||||||||||||    
T  44820391 ttaactatttatgtatggtaattgtagcaatctggaagaatacgagggaattgtga--aaaaaaaaagggaggaaaaagatgtattcttcctttattatc 44820294  T
Q  101 tacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44820293 tacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattataatcaa 44820194  T
Q  201 aacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44820193 aacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 44820135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 259
Target Start/End: Original strand, 10344588 - 10344841
Alignment:
Q  4 actatttatgtatggtaattgtagcaatctgaaagaataagagggaattgtggggnnnnnnnnggggatgaaaaagatgtattcttcctttattatctac 103  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||||||||           |||||||||||||||||||||||||||| ||||||     
T  10344588 actatttatgcatggtaattgtagcaatttggaagaataagagggaattgtgg--aaaaaaagagggatgaaaaagatgtattcttcctttactatctat 10344685  T
Q  104 aaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaac 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10344686 aaactttatgaatggatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcatagaatgtttcaacttaacattacaatcaaaac 10344785  T
Q  204 acacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10344786 acacaatatgattgagtaatagaattagaataaattgttgaaggatatgggttttg 10344841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 119 - 259
Target Start/End: Original strand, 42929991 - 42930126
Alignment:
Q  119 atttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaacacacaatatgattga 218  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||     ||||||    
T  42929991 atttgcaatcaattgcaacaaacatcactaaattaatcatactcaagtagcatacaatgtttcaacttaactttacaatcaaaacatac-----gattga 42930085  T
Q  219 gtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  42930086 gtaatgaaattagaataaattgttgaaggatatgggttttg 42930126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 22059108 - 22059220
Alignment:
Q  93 ttattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacatt 192  Q
    ||||||||||||  |||||||||||| | ||||||||||||||||||| |||| ||||||||| |||   |||||| ||||||||||||||| |||||||    
T  22059108 ttattatctacatgctttatgaatggttatgcaatcaattgcaacaaaaatcactaaattaataaaaaagaagtagaatacaatgtttcaac-taacatt 22059206  T
Q  193 acaatcaaaacaca 206  Q
    |||| |||||||||    
T  22059207 acaaccaaaacaca 22059220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 42929925 - 42929978
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  42929925 actatttatgtatggtaattggtatcaatctggaagaataagagggaattgtgg 42929978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 42827762 - 42827714
Alignment:
Q  211 atgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||||||||| | |||||||||||| ||| ||||||    
T  42827762 atgattgagtaatggaattagaagacattgttgaaggagatgagttttg 42827714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 42301074 - 42300819
Alignment:
Q  4 actatttatgtatggtaattgtagcaatctgaaagaataagagggaattgtggggnnnnnnnnggggatgaaaaagatgtattctt-cctttattatcta 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||          ||| ||||||||||||||||||| |||||||||||||    
T  42301074 actatttatgtatggtaattgtagcaatctggaagaataagagggaattgtggaaaaaaaagaggg-atgaaaaagatgtattcttgcctttattatcta 42300976  T
Q  103 caaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaa 202  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42300975 caaactttatgaatgaatttgcaatcaatcgcaacaaccatcactaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaa 42300876  T
Q  203 cacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42300875 cacacaatatgattgagtaatggaattagaataaattgttgaaggatatgagttttg 42300819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 68 - 259
Target Start/End: Complemental strand, 52794265 - 52794070
Alignment:
Q  68 gggatgaaaaagatgtattctt-cctttattatc---tacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaactta 163  Q
    |||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  52794265 gggatgaaaaagatgtattcttgcctttattatcatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcactaaactaatcaaactta 52794166  T
Q  164 agtagcatacaatgtttcaacttaacattacaatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52794165 agtagcatacaacgtttcaacttaacattacaatcaaaacacacaatatgattgagtgatggaattagaataaattgttgaaggatatgggttttg 52794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 9627400 - 9627490
Alignment:
Q  68 gggatgaaaaagatgtattctt-cct---ttattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaa 154  Q
    ||||||||||||||||||| || |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9627400 gggatgaaaaagatgtattgttgcctttattattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcactaaattaa 9627490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 31814715 - 31814830
Alignment:
Q  93 ttattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacatt 192  Q
    ||||||||||||  |||||||||||| | ||||||||||||||||||| |||| ||||||||| |||   |||||| ||||||||||||||| |||||||    
T  31814715 ttattatctacatgctttatgaatggttatgcaatcaattgcaacaaaaatcactaaattaataaaaaagaagtagaatacaatgtttcaac-taacatt 31814813  T
Q  193 acaatcaaaacacacaa 209  Q
    |||| ||||||||||||    
T  31814814 acaaccaaaacacacaa 31814830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 52794328 - 52794279
Alignment:
Q  4 actatttatgtatggtaatt-gtagcaatctgaaagaataagagggaatt 52  Q
    |||||||||||||||||||| ||||| ||||| |||||||||| ||||||    
T  52794328 actatttatgtatggtaattggtagcgatctggaagaataagaaggaatt 52794279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 12600513 - 12600259
Alignment:
Q  4 actatttatgtatggtaattgtagcaatctgaaagaataagagggaattgtggggnnnnnnnnggggatgaaaaagatgtattcttccttt-attatcta 102  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||          |||||||||||||||||||||| |||| ||||||||    
T  12600513 actatttatgtatgataattgtagcaatctggaagaataagagggaattatgggaaaaaaga--gggatgaaaaagatgtattcttgcttttattatcta 12600416  T
Q  103 caaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaa 202  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12600415 caaattttatgaatggatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcatacaatgtttcaacttaaaattacaatcaaaa 12600316  T
Q  203 cacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  12600315 cacacaatatgattgagtgatggaattagaataaattgttgaaggatatgagttttg 12600259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 20772922 - 20772661
Alignment:
Q  4 actatttatgtatggtaattgtagcaatctgaaagaataagagggaattgtggggnnnnnnnng-----gggatgaaaaagatgtattctt-cctttatt 97  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||                |||||||||||||||||||||| ||||| ||    
T  20772922 actatttatgtatggtaattgtagcaatctggaagaataagaggaaattgtggaagaaaaaaaaaaagagggatgaaaaagatgtattcttgcctttctt 20772823  T
Q  98 atctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaat 197  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  20772822 atctataaactttatgaatggatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcatataatatttcaacttaacattacaat 20772723  T
Q  198 caaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20772722 caaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 20772661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 7799172 - 7799287
Alignment:
Q  93 ttattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacatt 192  Q
    |||||||||||  ||||||||||||| | ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||    
T  7799172 ttattatctacctactttatgaatggttatgcaatcaattgcaacaaaaatcactaaattaatcaaatttaagtagcatacaatgtttcaac-taacatt 7799270  T
Q  193 acaatcaaaacacacaa 209  Q
    |||| ||||||||||||    
T  7799271 acaaccaaaacacacaa 7799287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 19398262 - 19398376
Alignment:
Q  94 tattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacatta 193  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  19398262 tattatctacatactttatgaatggctatgcaatcaattgcaacaaaaatcgctaaattaatcaaacttaagtagcatacaatgtttaaac-taaaatta 19398360  T
Q  194 caatcaaaacacacaa 209  Q
    ||| ||||||||||||    
T  19398361 caaccaaaacacacaa 19398376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 843154 - 843220
Alignment:
Q  188 acattacaatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||| |||||     ||| ||||||||||||||||||||||||||||||||||||||||    
T  843154 acattacaatcaaaacatacaat-----tgactaatggaattagaataaattgttgaaggatatgggttttg 843220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 19597591 - 19597639
Alignment:
Q  211 atgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  19597591 atgattgagtaatggaattagaagacattgttgaaggagatgggttttg 19597639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 19581195 - 19581243
Alignment:
Q  211 atgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||| ||||||||| | |||||||||||| ||||||||||    
T  19581195 atgattgagtaatagaattagaagatattgttgaaggagatgggttttg 19581243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 13374385 - 13374130
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtggggnnnnnnnnggggatgaaaaagatgtattctt-cctttattatct 101  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||||||||||           |||||||||||||||||||||| ||||||||||||    
T  13374385 actatttatgtatggtaattggtagcaatctcgaagaataagagggaattgtgg--aaaaaaagagggatgaaaaagatgtattcttgcctttattatct 13374288  T
Q  102 acaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaa 201  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13374287 acaaactttatgaatgaatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaa 13374188  T
Q  202 acacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  13374187 acatacaatatgattgagtaatggaattagaataaattgttgaaggatttggattttg 13374130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 9671367 - 9671281
Alignment:
Q  117 ggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaaca 204  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  9671367 ggatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagtat-caatgtttcaacttaacattacaatcaaaaca 9671281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 9671432 - 9671379
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  9671432 actatttatgtatggtaattggtagcaatctggaagaataagatggaattgtgg 9671379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 55018872 - 55019058
Alignment:
Q  74 aaaaagatgtattctt-cctttattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcata 172  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55018872 aaaaagatgtattcttgcctttattatctacaaactttatgaatggctttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcata 55018971  T
Q  173 caatgtttcaacttaacattac-aatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  55018972 caatgtttcaacttaacattacaaatcaaaacacac-atatgattgagtaatggaattagatgacattgttgaaggatatgggttttg 55019058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 38158135 - 38158321
Alignment:
Q  74 aaaaagatgtattctt-cctttattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcata 172  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38158135 aaaaagatgtattcttgcctttattatctacaaactttatgaatggctttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcata 38158234  T
Q  173 caatgtttcaacttaacattac-aatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||  | |||||||||||||||||||||||    
T  38158235 caatttttcaacttaacattacaaatcaaaacacac-atatgatcgagtaatggaattagatgacattgttgaaggatatgggttttg 38158321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 23703439 - 23703576
Alignment:
Q  117 ggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaacacacaatatgatt 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||     ||||    
T  23703439 ggatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcatacattgtttcaacttaacattacaatcaaaacatac-----gatt 23703533  T
Q  217 gagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  23703534 gagtaatggaattagaataaattgttgaaggatatgagttttg 23703576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 35785666 - 35785529
Alignment:
Q  117 ggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaacacacaatatgatt 216  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     ||||    
T  35785666 ggatttacaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaacatac-----gatt 35785572  T
Q  217 gagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  35785571 gagtaatggaattagaataaattgttgaaggatatgagttttg 35785529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 7108008 - 7108145
Alignment:
Q  117 ggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaacacacaatatgatt 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     ||| | ||    
T  7108008 ggatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagttgcatacaatgtttcaacttaacattacaatcaaaac-----atacgttt 7108102  T
Q  217 gagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  7108103 gagtaatggaattaaaataaattgttgaaggatatgagttttg 7108145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 23703376 - 23703429
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  23703376 actatttatgtatggtaattggtagcaatctggaagaataagagggaattgtgg 23703429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 4907099 - 4907165
Alignment:
Q  188 acattacaatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||| ||     |||||||||||||||||||||||||||||||||||||| | ||||||    
T  4907099 acattacaatcaaaacatac-----gattgagtaatggaattagaataaattgttgaaggataagagttttg 4907165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 4932968 - 4933034
Alignment:
Q  188 acattacaatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||| ||     |||||||||||||||||||||||||||||||||||||| | ||||||    
T  4932968 acattacaatcaaaacatac-----gattgagtaatggaattagaataaattgttgaaggataagtgttttg 4933034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 29756696 - 29756630
Alignment:
Q  188 acattacaatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||| ||     |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  29756696 acattacaatcaaaacatac-----gattgagtaatgaaattagaataaattgttgaaggataagggttttg 29756630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 7107942 - 7107995
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||||||| ||||||||| |||||||||  |||||||||||||||||||||    
T  7107942 actatttatgtgtggtaattggtagcaatctagaagaataagagggaattgtgg 7107995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 35785730 - 35785677
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||| ||||||||||||| |||||||||  |||||||||||||||||||||    
T  35785730 actatttgtgtatggtaattggtagcaatctagaagaataagagggaattgtgg 35785677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 38158066 - 38158119
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||||||||| ||||||| |||| ||||| | |||||||||||||||||||    
T  38158066 actatttatgtattgtaattggtagcgatctggaggaataagagggaattgtgg 38158119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 55018803 - 55018856
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||||||||| ||||||| |||| ||||| | |||||||||||||||||||    
T  55018803 actatttatgtatagtaattggtagcgatctggaggaataagagggaattgtgg 55018856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 12804 - 12941
Alignment:
Q  117 ggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaacacacaatatgatt 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     ||||||||    
T  12804 ggatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtggcatacaatgtttcaacttaacattacaatcaaaac-----atatgatt 12898  T
Q  217 gagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12899 gagtaatggaattagaataaattgttgaaggatatgggttttg 12941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 12740 - 12793
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  12740 actatttatgtatggtaattggtagcaatttggaagaataagagggaattgtgg 12793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 21143583 - 21143720
Alignment:
Q  117 ggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaacacacaatatgatt 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     |||    
T  21143583 ggatttgcaatcaattgcaacaaacatcactaaattaatcaaacttaagtagcatacaatgtttcaacttaacattacaatcaaaacataca-----att 21143677  T
Q  217 gagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  21143678 gagtaatggaattagaataaattgttgaagcatattggttttg 21143720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 358947 - 359013
Alignment:
Q  188 acattacaatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||| ||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  358947 acattacaatcaaaacatac-----gattgagtaatggaattagaataaattgttgaaggatatgggttttg 359013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 21143517 - 21143570
Alignment:
Q  4 actatttatgtatggtaattg-tagcaatctgaaagaataagagggaattgtgg 56  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  21143517 actatttatgtatggtaattggtagcaatctggaagaataagagggaattgtgg 21143570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 3202 - 3317
Alignment:
Q  93 ttattatctacaaactttatgaatggatttgcaatcaattgcaacaaacatcattaaattaatcaaacttaagtagcatacaatgtttcaacttaacatt 192  Q
    ||||||||||||  |||||||||||| | ||||||||||||||||||| |||| ||||||||| |||   |||||| ||||||||||||||| |||||||    
T  3202 ttattatctacatgctttatgaatggttatgcaatcaattgcaacaaaaatcactaaattaataaaaaagaagtagaatacaatgtttcaac-taacatt 3300  T
Q  193 acaatcaaaacacacaa 209  Q
    |||| ||||||||||||    
T  3301 acaaccaaaacacacaa 3317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 24612702 - 24612636
Alignment:
Q  188 acattacaatcaaaacacacaatatgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||| ||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  24612702 acattacaatcaaaacatac-----gattgagtaatggaattagaataaattgttgaaggatatgggttttg 24612636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 41385421 - 41385469
Alignment:
Q  211 atgattgagtaatggaattagaataaattgttgaaggatatgggttttg 259  Q
    ||||||||||||||||||||||| | |||||||||||| ||| ||||||    
T  41385421 atgattgagtaatggaattagaagacattgttgaaggagatgagttttg 41385469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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