View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16630_low_4 (Length: 584)

Name: NF16630_low_4
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16630_low_4
NF16630_low_4
[»] chr2 (3 HSPs)
chr2 (362-481)||(13510589-13510708)
chr2 (1-64)||(13510165-13510229)
chr2 (478-566)||(13511732-13511819)
[»] chr4 (4 HSPs)
chr4 (435-569)||(12631946-12632079)
chr4 (458-569)||(27107652-27107762)
chr4 (125-200)||(12632400-12632475)
chr4 (125-200)||(27108107-27108182)
[»] chr1 (2 HSPs)
chr1 (435-569)||(44680266-44680399)
chr1 (125-200)||(44680720-44680795)
[»] chr7 (4 HSPs)
chr7 (525-569)||(19471370-19471414)
chr7 (515-569)||(19475662-19475716)
chr7 (493-557)||(10880051-10880114)
chr7 (497-569)||(10881730-10881801)
[»] chr6 (2 HSPs)
chr6 (458-569)||(2482062-2482172)
chr6 (125-200)||(2481642-2481717)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 362 - 481
Target Start/End: Original strand, 13510589 - 13510708
Alignment:
Q  362 aaggacattcataatcttattcgaaagccgggaaaaaagttgaaggaaat-atggtatggatcgtctcaaatactgtgaggatgcaaaaaagagtttctc 460  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||| ||||| |||    
T  13510589 aaggacattcataatctttttcgaaagctgggaaaaaagttgaaggaaatgatggtatgcatcgtctcgaatactgtgaggatgc-aaaatgagttgctc 13510687  T
Q  461 taaacttcagtatgcatatac 481  Q
    ||||||| |||||||||||||    
T  13510688 taaactttagtatgcatatac 13510708  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 13510165 - 13510229
Alignment:
Q  1 tttgtcttttataagagatatgcaaatcagcattgtttctcaattt-gaaaaagcagattcatca 64  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  13510165 tttgtcttctataagagatatgcaaatcagcattgtttctcaatttcgaaaaggcagattcatca 13510229  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 566
Target Start/End: Original strand, 13511732 - 13511819
Alignment:
Q  478 atacagttaataaataaagaaggttaaggcatatatttttggtctcttgcttcttgttttgattgttatcaaaaatatggtgacgttgt 566  Q
    |||||||| |||||||||||||||| |||||||| ||||||||| | | |||||||||||||||| ||| ||||||||||||| |||||    
T  13511732 atacagttgataaataaagaaggttgaggcatat-tttttggtcaccttcttcttgttttgattggtataaaaaatatggtgatgttgt 13511819  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 569
Target Start/End: Complemental strand, 12632079 - 12631946
Alignment:
Q  435 tgtgaggatgcaaaaaagagtttctctaaacttcagtatgcatatacagttaataaataaagaaggttaaggcatatatttttggtctcttgcttcttgt 534  Q
    ||||||| ||||||||| | || ||||||| |||| ||||| |||||| || || || |||||||||||  |||||| |||||||||    |||||||||    
T  12632079 tgtgagggtgcaaaaaaaacttcctctaaatttcaatatgcttatacacttgatgaagaaagaaggttagagcatat-tttttggtcctcggcttcttgt 12631981  T
Q  535 tttgattgttatcaaaaatatggtgacgttgttgt 569  Q
    |||||||| || |||||||| ||||| ||||||||    
T  12631980 tttgattggtaccaaaaatacggtgatgttgttgt 12631946  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 27107762 - 27107652
Alignment:
Q  458 ctctaaacttcagtatgcatatacagttaataaataaagaaggttaaggcatatatttttggtctcttgcttcttgttttgattgttatcaaaaatatgg 557  Q
    ||||||| |||| ||||| |||||| || || || |||||||||||  |||||| |||||||||    ||||||||||||||||| || |||||||| ||    
T  27107762 ctctaaatttcaatatgcttatacacttgatgaagaaagaaggttagagcatat-tttttggtcctcggcttcttgttttgattggtaccaaaaatacgg 27107664  T
Q  558 tgacgttgttgt 569  Q
    ||| ||||||||    
T  27107663 tgatgttgttgt 27107652  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 12632475 - 12632400
Alignment:
Q  125 ttgaaaataatagaaccgttaaaacatcagagaaatggagaatccacaaggtgtgaatacaaagctcgtttacgaa 200  Q
    ||||||||||| ||||| | |||| | ||||||||| || ||||| ||| |||||||| |||||||| ||||||||    
T  12632475 ttgaaaataatggaaccatcaaaagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaa 12632400  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 27108182 - 27108107
Alignment:
Q  125 ttgaaaataatagaaccgttaaaacatcagagaaatggagaatccacaaggtgtgaatacaaagctcgtttacgaa 200  Q
    ||||||||||| ||||| | |||| | ||||||||| || ||||| ||| |||||||| |||||||| ||||||||    
T  27108182 ttgaaaataatggaaccatcaaaagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaa 27108107  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 569
Target Start/End: Complemental strand, 44680399 - 44680266
Alignment:
Q  435 tgtgaggatgcaaaaaagagtttctctaaacttcagtatgcatatacagttaataaataaagaaggttaaggcatatatttttggtctcttgcttcttgt 534  Q
    ||||||| ||||||||| | || ||||||| |||| ||||| |||||| || || || |||||||||||  |||||| |||||||||    |||||||||    
T  44680399 tgtgagggtgcaaaaaaaacttcctctaaatttcaatatgcttatacacttgatgaagaaagaaggttagagcatat-tttttggtcctcggcttcttgt 44680301  T
Q  535 tttgattgttatcaaaaatatggtgacgttgttgt 569  Q
    |||||||| || |||||||| ||||| ||||||||    
T  44680300 tttgattggtaccaaaaatacggtgatgttgttgt 44680266  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 44680795 - 44680720
Alignment:
Q  125 ttgaaaataatagaaccgttaaaacatcagagaaatggagaatccacaaggtgtgaatacaaagctcgtttacgaa 200  Q
    ||||||||||| ||||| | |||| | ||||||||| || ||||| ||| |||||||| |||||||| ||||||||    
T  44680795 ttgaaaataatggaaccatcaaaagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaa 44680720  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 525 - 569
Target Start/End: Original strand, 19471370 - 19471414
Alignment:
Q  525 tgcttcttgttttgattgttatcaaaaatatggtgacgttgttgt 569  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||    
T  19471370 tgcttcttgttttgattgatatcaaaaatatggtgatgttgttgt 19471414  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 569
Target Start/End: Complemental strand, 19475716 - 19475662
Alignment:
Q  515 tttggtctcttgcttcttgttttgattgttatcaaaaatatggtgacgttgttgt 569  Q
    ||||||||| | |||||||||||||||| || |||||||||||||| ||||||||    
T  19475716 tttggtctcctacttcttgttttgattggtaccaaaaatatggtgatgttgttgt 19475662  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 10880051 - 10880114
Alignment:
Q  493 aaagaaggttaaggcatatatttttggtctcttgcttcttgttttgattgttatcaaaaatatgg 557  Q
    |||||||||||  |||||| || |||||||| |||||||||||||||||| || |||||||||||    
T  10880051 aaagaaggttagagcatat-ttgttggtctcctgcttcttgttttgattggtaccaaaaatatgg 10880114  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 569
Target Start/End: Complemental strand, 10881801 - 10881730
Alignment:
Q  497 aaggttaaggcatatatttttggtctcttgcttcttgttttgattgttatcaaaaatatggtgacgttgttgt 569  Q
    |||||||| |||||| ||||||||||| |||||||||||| ||||| ||  ||||| |||| || ||||||||    
T  10881801 aaggttaaagcatat-tttttggtctcatgcttcttgtttggattgctacaaaaaacatggggatgttgttgt 10881730  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 2482062 - 2482172
Alignment:
Q  458 ctctaaacttcagtatgcatatacagttaataaataaagaaggttaaggcatatatttttggtctcttgcttcttgttttgattgttatcaaaaatatgg 557  Q
    ||||||| |||| ||||| |||||| || || || |||||||||||  |||||| |||||||||    ||||||||||||||||| || |||||||| ||    
T  2482062 ctctaaatttcaatatgcttatacacttgatgaagaaagaaggttagagcatat-tttttggtcctcggcttcttgttttgattggtaccaaaaatacgg 2482160  T
Q  558 tgacgttgttgt 569  Q
    ||| ||||||||    
T  2482161 tgatgttgttgt 2482172  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 2481642 - 2481717
Alignment:
Q  125 ttgaaaataatagaaccgttaaaacatcagagaaatggagaatccacaaggtgtgaatacaaagctcgtttacgaa 200  Q
    ||||||||||| ||||| | |||| | ||||||||| || ||||| ||| |||||||| |||||||| ||||||||    
T  2481642 ttgaaaataatggaaccatcaaaagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaa 2481717  T

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