View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_40 (Length: 246)
Name: NF16630_low_40
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7451466 - 7451236
Alignment:
| Q |
1 |
atactaatacctttcacgctagccattgaataaaatattactcccattactacgtgcttagtttaatatcagtggctatatcaattttttaagtaagtgt |
100 |
Q |
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| T |
7451466 |
atactaatccctttcacgctagccattgaataaaatattactcccattaccacgtgcttaatttaatatcagtggctatatcaattttttaagtaagtgt |
7451367 |
T |
|
| Q |
101 |
atatgcatggctgtgaactgaacgggtaagcctccactgttcctttccttctttatgcttcacctatagctctagttttcaacaacccctaaattgcgcc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7451366 |
atatgcatggttgtgaactgaacgggtaagcctccactgttcctttccttctttatgcttcacctatagctctagttttcaacaacccctaaattgcgcc |
7451267 |
T |
|
| Q |
201 |
acaattcgggcattagcttaatttgttcatc |
231 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
7451266 |
acaattggggcattagcttaatttgttcatc |
7451236 |
T |
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