View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_43 (Length: 245)
Name: NF16630_low_43
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_43 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 487129 - 486903
Alignment:
| Q |
2 |
gaacaaaatgcacagttggattggacgaagcggcttgatataataaatggaatagcaaggggaattctttatcttcatgaagattctagacttcaaataa |
101 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
487129 |
gaacaacatgcacagttggattggacgaagcggcttgatataataaatggaatagcaaggggaattctttatcttcatgaagattctagacttcaaataa |
487030 |
T |
|
| Q |
102 |
tacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaagccaaagatttcagactttggaatggccagaatatttgcaggaagtgaagg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
487029 |
tacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaacccaaagatttcagactttggaatggccagaatatttgcaggaagtgaagg |
486930 |
T |
|
| Q |
202 |
tgaagctaacactactacaatagttgg |
228 |
Q |
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||||||||||||||||||||||||||| |
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| T |
486929 |
tgaagctaacactactacaatagttgg |
486903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 22689458 - 22689341
Alignment:
| Q |
66 |
ttctttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaagccaaagatttcaga |
165 |
Q |
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|||||||||||||| ||||||||| | | ||| |||||||| |||||||| ||||| ||| | ||| | |||||||| ||||| |||||||||||||| |
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| T |
22689458 |
ttctttatcttcatcaagattctatattaagaatcatacatagggatctaaaggcaagcaatattttagtagacaatgatatgaatccaaagatttcaga |
22689359 |
T |
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| Q |
166 |
ctttggaatggccagaat |
183 |
Q |
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||||| ||||| ||||| |
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| T |
22689358 |
ttttggcatggctagaat |
22689341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 40126087 - 40126025
Alignment:
| Q |
70 |
ttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgtt |
132 |
Q |
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||||||||||||||| || ||| || |||| |||||||| ||| |||| |||||||||||||| |
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| T |
40126087 |
ttatcttcatgaagagtcaagaattaaaatcatacatagggatataaaggcaagtaatgtgtt |
40126025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 28433121 - 28433242
Alignment:
| Q |
62 |
ggaattctttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaagccaaagattt |
161 |
Q |
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||||||| ||||||||| ||||||||||| | || ||||| ||||||||||| ||||||||| | ||| | |||||||| ||| | || || |||| |
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| T |
28433121 |
ggaattcaatatcttcatcaagattctagattaaggatcatacacagagatctaaaggcaagtaatattttactagacaatgaaatggatcctaaaattt |
28433220 |
T |
|
| Q |
162 |
cagactttggaatggccagaat |
183 |
Q |
| |
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|||| ||||| ||||| ||||| |
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| T |
28433221 |
cagattttggcatggctagaat |
28433242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 8401 - 8284
Alignment:
| Q |
66 |
ttctttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaagccaaagatttcaga |
165 |
Q |
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|||||||||||||| ||||||| ||| | | ||| ||||| |||||||| |||| |||||| | ||||||||| |||| ||||| || || |||||||| |
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| T |
8401 |
ttctttatcttcatcaagattcaagattacgaatcatacacagagatctgaaagtgagtaatattttattggacgatgatatgaatcccaaaatttcaga |
8302 |
T |
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| Q |
166 |
ctttggaatggccagaat |
183 |
Q |
| |
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||||| ||||| ||||| |
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| T |
8301 |
ttttggcatggctagaat |
8284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 1077314 - 1077416
Alignment:
| Q |
69 |
tttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaagccaaagatttcagactt |
168 |
Q |
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||||||||||| ||||||||||| | || |||||| ||||||||||| |||||||| | ||||| |||||||| ||||| ||||| || ||||| || |
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| T |
1077314 |
tttatcttcatcaagattctagattgaggatcatacatcgagatctaaaaccaagtaatattttattagacaatgatatgaatccaaaaatatcagattt |
1077413 |
T |
|
| Q |
169 |
tgg |
171 |
Q |
| |
|
||| |
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|
| T |
1077414 |
tgg |
1077416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 4548122 - 4548064
Alignment:
| Q |
71 |
tatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgt |
129 |
Q |
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|||||||||||||| ||||||||| | |||| |||||||| ||||||||||||||||| |
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| T |
4548122 |
tatcttcatgaagactctagacttagagtaatccatagagacctaaaagcaagtaatgt |
4548064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 3080412 - 3080467
Alignment:
| Q |
74 |
cttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgt |
129 |
Q |
| |
|
||||||||||| ||||||||| | |||| |||||||| ||||||||||||||||| |
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| T |
3080412 |
cttcatgaagactctagacttagagtaatccatagagacctaaaagcaagtaatgt |
3080467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 3094846 - 3094904
Alignment:
| Q |
71 |
tatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgt |
129 |
Q |
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|||||||||||||| |||||||| | |||| |||||||| ||||||||||||||||| |
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| T |
3094846 |
tatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgt |
3094904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 1050411 - 1050492
Alignment:
| Q |
69 |
tttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaa |
150 |
Q |
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||||||||||| ||||||||||| | || |||||| ||||||||||| |||||||| | ||||| |||||||| ||||| |
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| T |
1050411 |
tttatcttcatcaagattctagattaaggatcatacatcgagatctaaaaccaagtaatattttattagacaatgatatgaa |
1050492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 1091154 - 1091235
Alignment:
| Q |
69 |
tttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaa |
150 |
Q |
| |
|
||||||||||| ||||||||||| | || |||||| ||||||||||| |||||||| | ||||| |||||||| ||||| |
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|
| T |
1091154 |
tttatcttcatcaagattctagattgaggatcatacatcgagatctaaaaccaagtaatattttattagacaatgatatgaa |
1091235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 47584283 - 47584404
Alignment:
| Q |
62 |
ggaattctttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaagccaaagattt |
161 |
Q |
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||||||||||| || |||||||||||| | || ||||||||||| | ||||| ||| | || ||||| ||||| || | | ||||||| ||||| || | |
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| T |
47584283 |
ggaattctttacctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatat |
47584382 |
T |
|
| Q |
162 |
cagactttggaatggccagaat |
183 |
Q |
| |
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|||| ||||| ||||| ||||| |
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|
| T |
47584383 |
cagattttggcatggctagaat |
47584404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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