View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16630_low_44 (Length: 241)

Name: NF16630_low_44
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16630_low_44
NF16630_low_44
[»] chr1 (7 HSPs)
chr1 (1-221)||(29099670-29099889)
chr1 (152-221)||(2509028-2509097)
chr1 (152-221)||(34307256-34307325)
chr1 (152-221)||(39249981-39250050)
chr1 (154-221)||(19258790-19258857)
chr1 (1-35)||(15496014-15496048)
chr1 (153-221)||(10146971-10147039)
[»] chr3 (13 HSPs)
chr3 (98-151)||(37067076-37067129)
chr3 (152-221)||(21559565-21559634)
chr3 (152-221)||(38231297-38231366)
chr3 (152-221)||(46112062-46112131)
chr3 (152-221)||(22894684-22894753)
chr3 (152-221)||(29460664-29460733)
chr3 (152-221)||(29471516-29471585)
chr3 (152-221)||(36749410-36749479)
chr3 (154-219)||(39072393-39072458)
chr3 (154-221)||(39467219-39467286)
chr3 (152-221)||(36370456-36370525)
chr3 (152-221)||(43999993-44000062)
chr3 (156-221)||(20856269-20856334)
[»] chr7 (15 HSPs)
chr7 (152-221)||(7700001-7700070)
chr7 (152-221)||(7700199-7700268)
chr7 (152-221)||(7700397-7700466)
chr7 (152-221)||(7700595-7700664)
chr7 (152-221)||(36346682-36346751)
chr7 (154-221)||(13108154-13108221)
chr7 (154-221)||(23980137-23980204)
chr7 (152-221)||(42221081-42221150)
chr7 (154-221)||(31148296-31148363)
chr7 (152-221)||(26972321-26972390)
chr7 (152-221)||(28307613-28307682)
chr7 (152-213)||(34108430-34108491)
chr7 (154-221)||(5811281-5811348)
chr7 (152-221)||(30887704-30887773)
chr7 (153-221)||(38321014-38321082)
[»] chr5 (10 HSPs)
chr5 (152-221)||(40888060-40888129)
chr5 (152-221)||(1815734-1815803)
chr5 (152-221)||(9408157-9408226)
chr5 (152-221)||(33404554-33404623)
chr5 (152-221)||(39370931-39371000)
chr5 (154-221)||(13347134-13347201)
chr5 (152-221)||(4300661-4300730)
chr5 (152-221)||(12164255-12164324)
chr5 (152-221)||(27553491-27553560)
chr5 (157-221)||(41003967-41004031)
[»] chr6 (5 HSPs)
chr6 (154-221)||(14022940-14023007)
chr6 (152-221)||(3118165-3118234)
chr6 (152-221)||(3987023-3987092)
chr6 (154-221)||(24208450-24208517)
chr6 (152-210)||(13697573-13697630)
[»] chr8 (7 HSPs)
chr8 (152-221)||(12665348-12665417)
chr8 (152-221)||(30432343-30432412)
chr8 (152-221)||(36189220-36189289)
chr8 (152-217)||(44081784-44081849)
chr8 (154-221)||(33726017-33726084)
chr8 (152-221)||(10203668-10203737)
chr8 (152-221)||(42162602-42162671)
[»] chr4 (9 HSPs)
chr4 (152-221)||(21391073-21391142)
chr4 (152-221)||(28093214-28093283)
chr4 (152-221)||(45829375-45829444)
chr4 (152-221)||(46192363-46192432)
chr4 (152-221)||(49243819-49243888)
chr4 (152-221)||(3672278-3672347)
chr4 (152-221)||(7217769-7217838)
chr4 (152-221)||(44275710-44275779)
chr4 (152-192)||(43245522-43245562)
[»] chr2 (11 HSPs)
chr2 (152-221)||(33732573-33732642)
chr2 (152-221)||(36315565-36315634)
chr2 (152-221)||(44958117-44958186)
chr2 (154-221)||(37914354-37914421)
chr2 (152-221)||(37498983-37499052)
chr2 (154-218)||(6376354-6376418)
chr2 (152-221)||(16089826-16089895)
chr2 (1-37)||(6705646-6705682)
chr2 (153-221)||(3831015-3831081)
chr2 (152-221)||(14572999-14573068)
chr2 (1-38)||(40900330-40900367)
[»] scaffold0062 (1 HSPs)
scaffold0062 (152-221)||(6722-6791)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-38)||(23311-23348)
[»] scaffold0043 (1 HSPs)
scaffold0043 (152-221)||(87282-87350)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29099670 - 29099889
Alignment:
Q  1 agacccagtatcagcaccaccatgaaaaccaccacaaaagacccagtgtcagaaaataactcttgaggagagttacgttataactccaagctggcggacc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29099670 agacccagtatcagcaccaccatggaaaccaccacaaaagacccagtgtcagaaaataactcttgaggagagttacgttataactccaagctggcggacc 29099769  T
Q  101 ccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcggtcttatacataaaccatcttagatgacatacactcttttacgctcacac 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||  |||||    
T  29099770 ccaaccataattcttgcaaagtaactcatgttttgtagctcgagctggcggtcttatacataaaccaccttagatggcatacactc-tttacgtccacac 29099868  T
Q  201 acatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| ||||    
T  29099869 acatttgtgacatgtgacaaa 29099889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 2509028 - 2509097
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| |||||||||  ||||||| | ||||||||||||||||| ||||||||    
T  2509028 tcttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaa 2509097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 34307325 - 34307256
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| ||||| || ||||||| |||||||   ||||||||||||||||| ||||||||    
T  34307325 tcttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaa 34307256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 39250050 - 39249981
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | || |||||||||||||| ||||||||    
T  39250050 tcttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaa 39249981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 19258857 - 19258790
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    ||||||||||||||||| || || |||||||  |||||| | |||| | |||||||||||||||||||    
T  19258857 ttatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggcaaa 19258790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15496014 - 15496048
Alignment:
Q  1 agacccagtatcagcaccaccatgaaaaccaccac 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  15496014 agaccaagtatcagcaccaccatgaaaaccaccac 15496048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 10146971 - 10147039
Alignment:
Q  153 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||  |||| ||||| || ||||||| |||| || | |||||||| |||||||||||||||||    
T  10146971 cttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaa 10147039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 37067076 - 37067129
Alignment:
Q  98 accccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcgg 151  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37067076 accccaaccataattcttgcaaagtaacccatgttttgtagctccagctggcgg 37067129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 21559565 - 21559634
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||||||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  21559565 tcttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 21559634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 38231297 - 38231366
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  38231297 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 38231366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 46112131 - 46112062
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||||||||| ||||||||||  ||||||   ||||||||||||||||||||||||||    
T  46112131 tcttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaa 46112062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 22894684 - 22894753
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  22894684 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 22894753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 29460664 - 29460733
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| ||||||||||||||||||    
T  29460664 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaa 29460733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 29471516 - 29471585
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| ||||||||||||||||||    
T  29471516 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaa 29471585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 36749410 - 36749479
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | ||||||||||||||||| ||||||||    
T  36749410 tcttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaa 36749479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 39072458 - 39072393
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggca 219  Q
    |||||||| || || |||||||||||||||| ||||||| | |||| |||||||||||||||||||    
T  39072458 ttatacatgaatcaccttagatgacatacacccttttacacccacatacatttgtgacatgtggca 39072393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 39467286 - 39467219
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||| ||||||||| | |||||||||||||| ||||||| | |||||| |||||||||||||| ||||    
T  39467286 ttatccataaaccaccatagatgacatacacccttttacacccacacatatttgtgacatgtgccaaa 39467219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 36370525 - 36370456
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||||||| ||||    
T  36370525 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaa 36370456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 43999993 - 44000062
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||| ||||||||    
T  43999993 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaa 44000062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 20856334 - 20856269
Alignment:
Q  156 atacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||| |||||  |||| || ||||||| ||||||| | || |||||||||||||||||||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaa 20856269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 7700070 - 7700001
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  7700070 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 7700001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 7700268 - 7700199
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  7700268 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 7700199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 7700466 - 7700397
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  7700466 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 7700397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 7700664 - 7700595
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  7700664 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 7700595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 36346751 - 36346682
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||||||||| || ||||||| ||||||| | || |||||||||||||| ||||||||    
T  36346751 tcttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaa 36346682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 13108154 - 13108221
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||| |||||  | ||||||| ||||||| | ||||||||||||||||||||||||||    
T  13108154 ttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaa 13108221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 23980137 - 23980204
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||| | ||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  23980137 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 23980204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 42221150 - 42221081
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || |||||||| |||||| | ||||||||||||||||| ||||||||    
T  42221150 tcttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaa 42221081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 31148296 - 31148363
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||| ||||||||||| || ||||||| ||||||| | |||||||||||||||||  |||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaa 31148363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 26972390 - 26972321
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||| ||||| ||||||||    
T  26972390 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaa 26972321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 28307682 - 28307613
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||| | ||||| || ||||||| ||||||| | |||||||||||| |||| ||||||||    
T  28307682 tcttatacataaactaccttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaa 28307613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 34108430 - 34108491
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacat 213  Q
    |||||||||| ||||| ||||| |||||||||| ||||||| | |||||| |||||||||||    
T  34108430 tcttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacat 34108491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 5811348 - 5811281
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||| | ||| || ||||||  ||||| | | ||||||||||||||||||||||||||    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaa 5811281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 30887704 - 30887773
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||| ||||||| || ||||||| ||||||| | |||| |||||||||||| || |||||    
T  30887704 tcttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaa 30887773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 38321014 - 38321082
Alignment:
Q  153 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    ||||||||| ||||||||||| || |||||||  ||| || | |||| ||| |||||||||||||||||    
T  38321014 cttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaa 38321082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 40888129 - 40888060
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| ||||| || ||||||||||||||| | ||||||||||||||||| ||||||||    
T  40888129 tcttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaa 40888060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 1815803 - 1815734
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||||||||| |||||||||| |||||||   |||||| |||||||||| ||||||||    
T  1815803 tcttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaa 1815734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 9408226 - 9408157
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| || || |||||||| | ||||||| ||||||||||||||||||| ||||||||    
T  9408226 tcttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaa 9408157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 33404623 - 33404554
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  33404623 tcttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaa 33404554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 39370931 - 39371000
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||| ||||    
T  39370931 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaa 39371000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 13347134 - 13347201
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 13347201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 4300730 - 4300661
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| |||||| |||| ||||||| |  ||||||| | |||||| ||||||||||| |||||||    
T  4300730 tcttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggcaaa 4300661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 12164255 - 12164324
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||||||||| || || ||| ||||| |  |||||||||| ||||| |||||||||||    
T  12164255 tcttatacatgaaccatcttaggtggcacacattctttaatactcacacacagttgtggcatgtggcaaa 12164324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 27553560 - 27553491
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| |||||| |||| || |||| ||  |||||| | ||||||||||||||||| ||||||||    
T  27553560 tcttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaa 27553491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 41004031 - 41003967
Alignment:
Q  157 tacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    ||||| |||||  |||| || ||||||| ||||||| |||| |||||||| ||||||||||||||    
T  41004031 tacatgaaccactttaggtggcatacacccttttacactcatacacatttatgacatgtggcaaa 41003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 14022940 - 14023007
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 14023007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 3118234 - 3118165
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    ||||||| || ||||| ||||| || ||||||| ||||||| ||||||||||||||||||| ||||||||    
T  3118234 tcttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaa 3118165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 3987092 - 3987023
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  3987092 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 3987023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 24208450 - 24208517
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| ||| ||  ||||||| |||||| | ||||||||||||||| ||||||||||    
T  24208450 ttatacataaaccatcataggtggtatacactattttacacccacacacatttgtgatatgtggcaaa 24208517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 13697573 - 13697630
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtga 210  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | || ||||||||||||    
T  13697573 tcttatacataaaccatcttagatgacatgcacccttttacac-catacacatttgtga 13697630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 12665348 - 12665417
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| ||||||||||||||| ||||||||||||    
T  12665348 tcttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaa 12665417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 30432343 - 30432412
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| |||||||| ||||||| ||||||  | ||||||||||||||||| ||||||||    
T  30432343 tcttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaa 30432412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 36189220 - 36189289
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | |||| |||||||||||| ||||||||    
T  36189220 tcttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaa 36189289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 44081784 - 44081849
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtgg 217  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | ||||||||||||| ||| ||||    
T  44081784 tcttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtgg 44081849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 33726017 - 33726084
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    ||||||||||||||  |||| || |||||||  |||||| | |||| |||||||||||||||||||||    
T  33726017 ttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaa 33726084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 10203668 - 10203737
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| |||||||||  |||||||   ||||||||||||||||| ||| ||||    
T  10203668 tcttatacatgaaccaccttaggtgacatacatccttttacatccacacacatttgtgacacgtgacaaa 10203737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 42162602 - 42162671
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | || |||||||||||||| ||| ||||    
T  42162602 tcttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaa 42162671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 21391142 - 21391073
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  21391142 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 21391073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 28093283 - 28093214
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  28093283 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 28093214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 45829444 - 45829375
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| |||||  |||| ||||||||||  |||||| | ||||||||||||||||||||||||||    
T  45829444 tcttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaa 45829375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 46192363 - 46192432
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| || || ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  46192363 tcttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 46192432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 49243819 - 49243888
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   ||||||||||||||||||||||||||    
T  49243819 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaa 49243888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 3672278 - 3672347
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   ||||||||||||||||| ||||||||    
T  3672278 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaa 3672347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 7217769 - 7217838
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| ||||| || ||||||| |||| || |  |||||||||||||||| ||||||||    
T  7217769 tcttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggcaaa 7217838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 44275710 - 44275779
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| ||||| || |||| ||  |||||| ||||||||||||||||||| ||| ||||    
T  44275710 tcttatacataaaccaccttaggtggcatataccattttacactcacacacatttgtgacacgtgccaaa 44275779  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 43245522 - 43245562
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttac 192  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  43245522 tcttatacatgaaccatcttagatgacatacacccttttac 43245562  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 33732573 - 33732642
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  33732573 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 33732642  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 36315565 - 36315634
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  36315565 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 36315634  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 44958117 - 44958186
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  44958117 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 44958186  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 37914421 - 37914354
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||| ||||| || ||||||| |||||||   ||||||||||||||||||||||||||    
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaa 37914354  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 37499052 - 37498983
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    ||||||| || ||||||||||  || ||||||  ||||||| ||||||||||||||||||||||||||||    
T  37499052 tcttatatatcaaccatcttaactggcatacatccttttacactcacacacatttgtgacatgtggcaaa 37498983  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 6376418 - 6376354
Alignment:
Q  154 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggc 218  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||    
T  6376418 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc 6376354  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 16089826 - 16089895
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||  || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  16089826 tcttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 16089895  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6705646 - 6705682
Alignment:
Q  1 agacccagtatcagcaccaccatgaaaaccaccacaa 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6705646 agaccaagtatcagcaccaccatgaaaaccaccacaa 6705682  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 3831081 - 3831015
Alignment:
Q  153 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    ||||||||| ||||| ||||| |||||||||| ||||||| | ||||||  ||||||||| ||||||||    
T  3831081 cttatacatgaaccaccttaggtgacatacacccttttacacccacaca--tttgtgacacgtggcaaa 3831015  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 14572999 - 14573068
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||||||||| ||||| || ||| ||| |||||||   ||||||||||||||||| || |||||    
T  14572999 tcttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaa 14573068  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40900330 - 40900367
Alignment:
Q  1 agacccagtatcagcaccaccatgaaaaccaccacaaa 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  40900330 agacccagtatcagcaccaccatagaaaccaccacaaa 40900367  T

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Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 6722 - 6791
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  6722 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 6791  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23311 - 23348
Alignment:
Q  1 agacccagtatcagcaccaccatgaaaaccaccacaaa 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  23311 agacctagtatcagcaccaccatggaaaccaccacaaa 23348  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 87350 - 87282
Alignment:
Q  152 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 221  Q
    |||||||||| ||||| ||||| || ||||||| ||| ||| | ||||||||||||||||| ||||||||    
T  87350 tcttatacatgaaccaccttaggtggcatacacccttgtacac-cacacacatttgtgacacgtggcaaa 87282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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