View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_46 (Length: 241)
Name: NF16630_low_46
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_46 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 49424029 - 49423790
Alignment:
| Q |
1 |
ttatccagattactaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaat |
100 |
Q |
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| T |
49424029 |
ttatccagattactaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaat |
49423930 |
T |
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| Q |
101 |
tcaaaaaataatggaaatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcatt |
200 |
Q |
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| T |
49423929 |
tcaaaaaataatggaa-tgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcatt |
49423831 |
T |
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| Q |
201 |
ttaaacttaaagatggagatggttgatagattcaactttca |
241 |
Q |
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| T |
49423830 |
ttaaacttaaagttggagatggttgatagattcaactttca |
49423790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 43363148 - 43363271
Alignment:
| Q |
116 |
aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatg |
215 |
Q |
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| T |
43363148 |
aatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--atgtag |
43363245 |
T |
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| Q |
216 |
gagatggttgatagattcaactttca |
241 |
Q |
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| T |
43363246 |
gagatgattaatagattcaactttca |
43363271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 49426060 - 49425946
Alignment:
| Q |
127 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagatggttga |
226 |
Q |
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| T |
49426060 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca |
49425961 |
T |
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| Q |
227 |
tagattcaactttca |
241 |
Q |
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||| ||||||||||| |
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| T |
49425960 |
tagtttcaactttca |
49425946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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