View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_48 (Length: 237)
Name: NF16630_low_48
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 54259331 - 54259527
Alignment:
| Q |
14 |
atgaaatgaaagatagttactcatattattcataaacaatgaaaatataattaattacctgaaaatatagatagatcgactgagtagagtgaaagaaaag |
113 |
Q |
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| T |
54259331 |
atgaaatgaaagatagttactcatattattcataaacaatgaaaatataattaattacctgaaaatatagatagatcgactgagtagagtgaaagaaaa- |
54259429 |
T |
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| Q |
114 |
gtttggtttggtttggaggaggaggagactgatgagaccaactcgagacttctcttcctcgctcgctgactcgactcagccgtaattgttttctgatatt |
213 |
Q |
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| T |
54259430 |
----ggtttggtttggaggaggaggagactgatgagaccaactcgagacttctcttcctcgctcactcactcgactcagccgtaattgttttctgatatt |
54259525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 26907852 - 26907936
Alignment:
| Q |
94 |
tgagtagagtgaaagaaaaggtttg---gtttggtttgga--ggaggaggagactgatgagaccaactcgagacttctcttcctc |
173 |
Q |
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| T |
26907852 |
tgagtagagtgaaagaaaaggtttgttagtttggtttggtttggaggaggagactgataagaccaactcgagacttctcttcctc |
26907936 |
T |
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