View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16630_low_5 (Length: 577)

Name: NF16630_low_5
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16630_low_5
NF16630_low_5
[»] chr8 (14 HSPs)
chr8 (211-561)||(12185143-12185482)
chr8 (211-561)||(12429571-12429910)
chr8 (197-353)||(12173876-12174032)
chr8 (197-353)||(12418304-12418460)
chr8 (17-157)||(12185497-12185635)
chr8 (17-157)||(12429925-12430063)
chr8 (17-110)||(12174030-12174123)
chr8 (17-110)||(12418458-12418551)
chr8 (518-560)||(5604558-5604600)
chr8 (518-560)||(5630770-5630812)
chr8 (518-561)||(6307557-6307600)
chr8 (518-561)||(9862186-9862229)
chr8 (518-561)||(13167974-13168017)
chr8 (258-298)||(5583567-5583607)
[»] chr3 (1 HSPs)
chr3 (18-78)||(4272042-4272103)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 211 - 561
Target Start/End: Complemental strand, 12185482 - 12185143
Alignment:
Q  211 ttgaaatcactaagttgaaattatgtttgaaaatttgtccaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatggtataaaat 310  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12185482 ttgaaatcactaacttgaaattatgtttgaaaatttgaacaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaat 12185383  T
Q  311 tctgttgcagcttatgtaaggacaagcaggcaataattaaactgattgaactagttgaatcatgacttagatgtctcaccgattcaatccctagtcggnn 410  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||      
T  12185382 tctgttgcagcttatgtaaagacatgcaggcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctagtcggtt 12185283  T
Q  411 nnnnnnnnnnnaatattataagcaattgttaggctttttaggagctaatgtcatctctataagttggtctcagcttatgttcttaagctctctgcaatag 510  Q
               ||| |||||||||||||||||||||           ||||||||||||||||||||| ||||||||||||||| |||||||   |||||    
T  12185282 tttctttttctaatgttataagcaattgttaggctt-----------atgtcatctctataagttggtttcagcttatgttcttcagctctcaataatag 12185194  T
Q  511 cttatgaaaagaatgtaaatgtaagctttggattgtaacttgtgctgttca 561  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  12185193 cttatgaaaagaatgtaaatgtgagctttggattgtaactggtgctgttca 12185143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 211 - 561
Target Start/End: Complemental strand, 12429910 - 12429571
Alignment:
Q  211 ttgaaatcactaagttgaaattatgtttgaaaatttgtccaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatggtataaaat 310  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12429910 ttgaaatcactaacttgaaattatgtttgaaaatttgaacaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaat 12429811  T
Q  311 tctgttgcagcttatgtaaggacaagcaggcaataattaaactgattgaactagttgaatcatgacttagatgtctcaccgattcaatccctagtcggnn 410  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||      
T  12429810 tctgttgcagcttatgtaaagacatgcaggcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctagtcggtt 12429711  T
Q  411 nnnnnnnnnnnaatattataagcaattgttaggctttttaggagctaatgtcatctctataagttggtctcagcttatgttcttaagctctctgcaatag 510  Q
               ||| |||||||||||||||||||||           ||||||||||||||||||||| ||||||||||||||| |||||||   |||||    
T  12429710 tttctttttctaatgttataagcaattgttaggctt-----------atgtcatctctataagttggtttcagcttatgttcttcagctctcaataatag 12429622  T
Q  511 cttatgaaaagaatgtaaatgtaagctttggattgtaacttgtgctgttca 561  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  12429621 cttatgaaaagaatgtaaatgtgagctttggattgtaactggtgctgttca 12429571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 197 - 353
Target Start/End: Complemental strand, 12174032 - 12173876
Alignment:
Q  197 taatgtactatacgttgaaatcactaagttgaaattatgtttgaaaatttgtccaggggtgtacttgaagaactcttgcatattggatttggcggagacc 296  Q
    |||| ||||||||  ||||||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12174032 taatatactatacactgaaatcactaagttaaaattatgtttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacc 12173933  T
Q  297 tcatggtataaaattctgttgcagcttatgtaaggacaagcaggcaataattaaact 353  Q
    ||||| ||||||||||||||||||||||||||| |||| |||| |||||||| ||||    
T  12173932 tcatgttataaaattctgttgcagcttatgtaaagacatgcagtcaataattgaact 12173876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 197 - 353
Target Start/End: Complemental strand, 12418460 - 12418304
Alignment:
Q  197 taatgtactatacgttgaaatcactaagttgaaattatgtttgaaaatttgtccaggggtgtacttgaagaactcttgcatattggatttggcggagacc 296  Q
    |||| ||||||||  ||||||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12418460 taatatactatacactgaaatcactaagttaaaattatgtttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacc 12418361  T
Q  297 tcatggtataaaattctgttgcagcttatgtaaggacaagcaggcaataattaaact 353  Q
    ||||| ||||||||||||||||||||||||||| |||| |||| |||||||| ||||    
T  12418360 tcatgttataaaattctgttgcagcttatgtaaagacatgcagtcaataattgaact 12418304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 12185635 - 12185497
Alignment:
Q  17 attttcagcaaagtgtctatggaactctttctaatctggaagcagcagaaacaaaagacttaaggtaatcttaaggaaaattgcttgttatt-aaaagag 115  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||||| |||| ||    
T  12185635 attttcagcaaagtgtctatggaactcttcccaatctggaaacagcagaaacagaagacttaaggt-atcttagggaaaattgcttgttattaaaaatag 12185537  T
Q  116 atagtggatattaattgcttctcactttttcaagtttttcaa 157  Q
    |||||||  ||||||| |||| ||||||||||| ||||||||    
T  12185536 atagtgg--attaattacttcgcactttttcaaatttttcaa 12185497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 12430063 - 12429925
Alignment:
Q  17 attttcagcaaagtgtctatggaactctttctaatctggaagcagcagaaacaaaagacttaaggtaatcttaaggaaaattgcttgttatt-aaaagag 115  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||||| |||| ||    
T  12430063 attttcagcaaagtgtctatggaactcttcccaatctggaaacagcagaaacagaagacttaaggt-atcttagggaaaattgcttgttattaaaaatag 12429965  T
Q  116 atagtggatattaattgcttctcactttttcaagtttttcaa 157  Q
    |||||||  ||||||| |||| ||||||||||| ||||||||    
T  12429964 atagtgg--attaattacttcgcactttttcaaatttttcaa 12429925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 12174123 - 12174030
Alignment:
Q  17 attttcagcaaagtgtctatggaactctttctaatctggaagcagcagaaacaaaagacttaaggtaa---tcttaaggaaaattgcttgttattaa 110  Q
    |||||||||||||||||||||||||||   | ||||||||||||| ||||||||||||||||||||||   ||||| ||||||||||||| ||||||    
T  12174123 attttcagcaaagtgtctatggaactc---ccaatctggaagcagtagaaacaaaagacttaaggtaatattcttagggaaaattgcttgatattaa 12174030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 12418551 - 12418458
Alignment:
Q  17 attttcagcaaagtgtctatggaactctttctaatctggaagcagcagaaacaaaagacttaaggtaa---tcttaaggaaaattgcttgttattaa 110  Q
    |||||||||||||||||||||||||||   | ||||||||||||| ||||||||||||||||||||||   ||||| ||||||||||||| ||||||    
T  12418551 attttcagcaaagtgtctatggaactc---ccaatctggaagcagtagaaacaaaagacttaaggtaatattcttagggaaaattgcttgatattaa 12418458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 560
Target Start/End: Original strand, 5604558 - 5604600
Alignment:
Q  518 aaagaatgtaaatgtaagctttggattgtaacttgtgctgttc 560  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  5604558 aaagaatgtaaatgtaagctttggagtgtaactcgtgctgttc 5604600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 5630812 - 5630770
Alignment:
Q  518 aaagaatgtaaatgtaagctttggattgtaacttgtgctgttc 560  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  5630812 aaagaatgtaaatgtaagctttggagtgtaactcgtgctgttc 5630770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 561
Target Start/End: Original strand, 6307557 - 6307600
Alignment:
Q  518 aaagaatgtaaatgtaagctttggattgtaacttgtgctgttca 561  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||    
T  6307557 aaagaatctaaatgtaagctttggattgcaactagtgctgttca 6307600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 561
Target Start/End: Original strand, 9862186 - 9862229
Alignment:
Q  518 aaagaatgtaaatgtaagctttggattgtaacttgtgctgttca 561  Q
    ||||||| ||||||||||||||||||||||||| || |||||||    
T  9862186 aaagaatctaaatgtaagctttggattgtaactagttctgttca 9862229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 561
Target Start/End: Complemental strand, 13168017 - 13167974
Alignment:
Q  518 aaagaatgtaaatgtaagctttggattgtaacttgtgctgttca 561  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||    
T  13168017 aaagaatctaaatgtaagctttggattgtaactagtgttgttca 13167974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 5583607 - 5583567
Alignment:
Q  258 tacttgaagaactcttgcatattggatttggcggagacctc 298  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  5583607 tacttgaagaactcttgaatatcggatttggtggagacctc 5583567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 4272042 - 4272103
Alignment:
Q  18 ttttcagcaaagtgtctatggaactctttctaatctgg-aagcagcagaaacaaaagactta 78  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||    
T  4272042 ttttcagcaaagtgtctatggaactctttccaatctggaaagcagtagaagcaaaagactta 4272103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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