View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_50 (Length: 230)
Name: NF16630_low_50
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 11295806 - 11295580
Alignment:
| Q |
8 |
agtgagatgaattaatgatttcttgaggaaatactggtatatgtgtagactatttgatttgannnnnnngtctcttagaataagtctaaaataaatatta |
107 |
Q |
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| T |
11295806 |
agtgaaatgaattaatgatttcttgaggaaatactggtatatgtgtagactatttgatttgatttttttgtctcttagaataagtctaaaataaatatta |
11295707 |
T |
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| Q |
108 |
t------------------gaacaaattttgcaaggacttctaaaacaaaacatcaaggaccaaaaacaaagttatatatgttcaaggactattaac-aa |
188 |
Q |
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| T |
11295706 |
tagagacgaatttcaatatgaacaaattttgcaaggacttctaaaacaaaacatcaaggaccaaaaacaaagttatatatgttcaaggactaaaaacaaa |
11295607 |
T |
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| Q |
189 |
aaattttagaattcaaatatttttatg |
215 |
Q |
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| T |
11295606 |
aaattttagaattcaaatatttttatg |
11295580 |
T |
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