View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_53 (Length: 224)
Name: NF16630_low_53
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 8636778 - 8636964
Alignment:
| Q |
17 |
atcaatttggtccctgaaattgtagaactgtatgtatcaacataatctcatacattaataatattccaaagtgatccttgaaattgcaaaatgttaatca |
116 |
Q |
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| T |
8636778 |
atcaatttggtccctgaaattgtagaactgta----tcaacataatctcatacattaatagtaatccaaagtgatccttgaaattgcaaaatgctaatca |
8636873 |
T |
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| Q |
117 |
aatccgttcctttgttggtagtgatatggactaaagtgacattaagttggtaatgtcggagatgcaagtgaaaataagtgaataatgtctg |
207 |
Q |
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| T |
8636874 |
aatccgttcctttgttggtagtgatatggactaaagtgacattaagttggtaatgtcggagatgcaagtgaaaataagtgaataatgtctg |
8636964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 7424202 - 7424293
Alignment:
| Q |
19 |
caatttggtccctgaaattgtagaactgtatgtatcaacataatctcatacattaataatattccaaagtgatccttgaaattgcaaaatgttaat |
114 |
Q |
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| T |
7424202 |
caatttgatccctaaaattgtaggactgtat----caacctagtctctgacattaacaatatttcaaaatgatccctgaaattgcaaaatgttaat |
7424293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 9078278 - 9078337
Alignment:
| Q |
77 |
atattccaaagtgatccttgaaattgcaaaatgttaatcaaatccgttcctttgttggta |
136 |
Q |
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| T |
9078278 |
atattccaaaatgatcctcgaaattgcaaaattttaatcaaattcgtccctctattggta |
9078337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 21496420 - 21496460
Alignment:
| Q |
76 |
aatattccaaagtgatccttgaaattgcaaaatgttaatca |
116 |
Q |
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| T |
21496420 |
aatatttcaaaatgatccctgaaattgcaaaatgttaatca |
21496460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 44139288 - 44139328
Alignment:
| Q |
79 |
attccaaagtgatccttgaaattgcaaaatgttaatcaaat |
119 |
Q |
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| T |
44139288 |
attccacaatgatacttgaaattgcaaaatgttaatcaaat |
44139328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 54069267 - 54069319
Alignment:
| Q |
67 |
tacattaataatattccaaagtgatccttgaaattgcaaaatgttaatcaaat |
119 |
Q |
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| T |
54069267 |
tacattatgaatattccaaaattttccttgaaattgcaaaatattaatcaaat |
54069319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 21873693 - 21873581
Alignment:
| Q |
93 |
cttgaaattgcaaaatgttaatcaaatccgttcctttgttggtagtgatatggactaaagtgacattaagttggtaatgtcggagatgcaagtgaaaata |
192 |
Q |
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| T |
21873693 |
cttgaaattgcaaaattttaatcaaactcgttcctctattggtatttgtagggactagaatgacattaaattggtaatatcagggatgaattggaaacta |
21873594 |
T |
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| Q |
193 |
agtgaataatgtc |
205 |
Q |
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| T |
21873593 |
agtgaataatgtc |
21873581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 32702696 - 32702746
Alignment:
| Q |
153 |
tgacattaagttggtaatgtcggagatgcaagtgaaaataagtgaataatg |
203 |
Q |
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| T |
32702696 |
tgacaataagttggtaatgtcggagatgcatttgaaactaagagaataatg |
32702746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 592016 - 592045
Alignment:
| Q |
14 |
atcatcaatttggtccctgaaattgtagaa |
43 |
Q |
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| T |
592016 |
atcatcaatttggtccctgaaattgtagaa |
592045 |
T |
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