View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_54 (Length: 223)
Name: NF16630_low_54
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 31056629 - 31056435
Alignment:
| Q |
15 |
atgaagagaaggtgagagagtgaagtgtaccttttaatcctaaatttgcaagacctatggtagaaatgaaattggatttgtcacacttaattcctctcca |
114 |
Q |
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| T |
31056629 |
atgaagagaaggtgagagagtgaagtgtaccttttaatcctaaatttgcaagacctatggtagaaatgaaattggatttgtcacacttaattcctctcca |
31056530 |
T |
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| Q |
115 |
tttgggtttgcatggatttgtgttatttttccaagttgacaagagagtttgactttggtcgtcaaagctatctttccatttcaatagtgctaatt |
209 |
Q |
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| T |
31056529 |
tttgggtttgcatggatttgtgttatttttccaagttgacaagagagtttgactttggtcgtcaaagctatctttccatttcaatagtgctaatt |
31056435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 31101064 - 31100873
Alignment:
| Q |
15 |
atgaagagaaggtgagagagtgaagtgtaccttttaatcctaaatttgcaagacctatggtagaaatgaaattggatttgtcacacttaattcctctcca |
114 |
Q |
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| T |
31101064 |
atgaagagaaggtgagagagtgaagtgtaccttttagtcctaaatttgcaagatctatggtagaaatgagattggatttgtcacactcaattcctctcca |
31100965 |
T |
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| Q |
115 |
tttgggtttgcatggatttgtgttatttttccaagttgacaagagagtttgactttggtcgtcaaagctatctttccatttcaatagtgctaatt |
209 |
Q |
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| T |
31100964 |
tttg---ctgcatggatttgtggtatttttccaagttgacaagatactttgactttggttgtcaaagctagctttccattttaagagtgctaatt |
31100873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 31138441 - 31138264
Alignment:
| Q |
15 |
atgaagagaaggtgagagagtgaagtgtaccttttaatcctaaatttgcaagacctatggtagaaatgaaattggatttgtcacacttaattcctctcca |
114 |
Q |
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| T |
31138441 |
atgaagaaaaagtgagagagtgaagtgtaccttttagtccaaaattttcaaggtttatggtagaaatggatttcgagttgtcacaaaaaattcctttcca |
31138342 |
T |
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| Q |
115 |
tttgggtttgcatggatttgtgttatttttccaagttgacaagagagtttgactttggtcgtcaaagctatctttccattt |
195 |
Q |
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| T |
31138341 |
ttttg---tgcatgtatttgtggtatttttccaagttgacaagagagactggctttggttgtcaaagctatgtttccattt |
31138264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 31182156 - 31181972
Alignment:
| Q |
15 |
atgaagagaaggtgagagagtgaagtgtaccttttaatcctaaatttgcaagacctatggtagaaatgaaattggatttgtcacacttaattcctctcca |
114 |
Q |
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||||||| || ||||||||||||||||||||||||| ||||||| || |||| |||||||| ||| ||||||| |||||||| | ||||||| ||| |
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| T |
31182156 |
atgaagaaaatgtgagagagtgaagtgtaccttttagtcctaaactttcaaggtttatggtagtaattgaattggacttgtcacaatgaattccttgcca |
31182057 |
T |
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| Q |
115 |
tttgggtttgcatggatttgtgttatttttccaagttgacaagagagtttgactttggtcgtcaaagctatctttccatttcaatagtgct |
205 |
Q |
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| T |
31182056 |
tctg------catggatttgtggtatttttccaagttggcaagagagcttgacttggattgtcaaagctatttttccattttaatagtgct |
31181972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 31213831 - 31213668
Alignment:
| Q |
29 |
agagagtgaagtgtaccttttaatcctaaatttgcaagacctatggtagaaatgaaattggatttgtcacacttaattcctctccatttgggtttgcatg |
128 |
Q |
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| T |
31213831 |
agagtgtggagtttaccttttagtccataatttgcaagatttatggtagagatggatttggatttgtcacattgaattccttccca------gttgcatg |
31213738 |
T |
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| Q |
129 |
gatttgtgttatttttccaagttgacaagagagtttgactttggtcgtcaaagctatctttccatttcaa |
198 |
Q |
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|| | || | || |||||||||||| |||| ||| || |||| |||||||||||||||||||||||| |
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| T |
31213737 |
gactcgtagttcttgtccaagttgacagcagagcttggctgtggttgtcaaagctatctttccatttcaa |
31213668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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