View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16630_low_57 (Length: 209)
Name: NF16630_low_57
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_57 |
 | |
|
| [»] chr3 (29 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 3e-99; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 5298652 - 5298850
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
5298652 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgcttttacagctagaggcaaccctccacact |
5298751 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5298752 |
tttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcacaaacatactccaacattcactct |
5298850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 5267977 - 5268175
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
5267977 |
cacatatctgtctccaatatcttaacccattcatgttgagagaattttcttcgcaagagatttcccaaagtttttacagctaaaggtaaccctccacact |
5268076 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactct |
209 |
Q |
| |
|
| ||||| |||||||| |||||||||||||||||||| |||||||||||||| | || |||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
5268077 |
tatctactattttctttccaattgattcaagatttgggtattcacttgcattgcttccatgaaaagcatgtcgcacaaacatactccaacattcactct |
5268175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 4389051 - 4388855
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| || |||||| |||||| |
|
|
| T |
4389051 |
cacatatcggtctccaatatcctaacccattcacgttgagagaattttcttcgcaagagatttcccaacgtttttacagctaatggaaaccctacacact |
4388952 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcact |
207 |
Q |
| |
|
| ||||| |||||||||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
4388951 |
tatctacaattttcttgccaattgatacaagatttggatactcacttgcattccttccgtgaaaagcatgtctcacaaacattctccaacattcact |
4388855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 5250090 - 5250288
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
5250090 |
cacatatctgtctccaatatcttaacccaatcacgttgagaaaactttcttcgcaagagatttcccaaagtttttacagctaatggcaaccctccacact |
5250189 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactct |
209 |
Q |
| |
|
| ||| |||||||| ||||| ||||||||||||||||||||||||||||| | |||| |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
5250190 |
tgcctataattttcttaccaatagattcaagatttggatattcacttgcattccttccgtaaaaagcatgtctcacaaacatactccaacattcactct |
5250288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 8569056 - 8568913
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||||||||| ||| |||||||| |||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
8569056 |
cacatatcagtctccaatatgttagaccattcaccttgagaaaattttctttgcaagagattccccaatgttttcacagctaaaggcaaccctccacact |
8568957 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||||||| || ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
8568956 |
tttctacaatcttctttccaatcgattcaagatttggatattca |
8568913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 6259145 - 6259288
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| || |||||| |||||| |||||||| ||||||||||||| |||||| |||||||||| ||||| | |
|
|
| T |
6259145 |
cacaaatcagtctccaatatcttaacccattcattttcagagaactttctttgcaagagaatccccaatgttttcagagctgaaggcaaccccccacatt |
6259244 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
6259245 |
tttctactattttcttgccgatcgattcaagatttggatattca |
6259288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 6838984 - 6838843
Alignment:
| Q |
36 |
cccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacgattttcttgccaattga |
135 |
Q |
| |
|
|||||||| ||| |||||||||| | |||||||| |||||||||||||| | |||||||||||||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
6838984 |
cccattcatgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttatctacaatctttttgccaattga |
6838885 |
T |
|
| Q |
136 |
ttcaagatttggatattcacttgcatttgtgccgtgaaaagc |
177 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
6838884 |
ttcaagttttgggtattcgcttgcatttttgccgtgaaaagc |
6838843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 6882450 - 6882593
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||| ||||| ||||||| || |||||||||| || |||||||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
6882450 |
cacaaatcagtctccaataccttaatccattcagattcagagaatttttttagcaagagattccccaatgttttcagtgctaaaggcaaccccccacact |
6882549 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
6882550 |
tttctactattttcttgcctatcaattcaagatttggatattca |
6882593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 5280614 - 5280776
Alignment:
| Q |
23 |
tccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacgattt |
122 |
Q |
| |
|
||||||||||| |||||||| |||| ||||| |||||||||||||||| |||| ||| |||||||||||| |||||||||||| | ||| |||| |
|
|
| T |
5280614 |
tccaatatcttggtccattcaccaggagaaaatttcattcgcaagagattccctaatgatttcagagctaaaggcggccctccacacttgtttacaattt |
5280713 |
T |
|
| Q |
123 |
tcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctca |
185 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
5280714 |
tcttcccaattgattcaagatttggatattcacttgcattttttccgtgaaaagcatgtctca |
5280776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 6168837 - 6168980
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||| || ||||||| ||||| |||||||| ||||||||||||||||||| |||||| |||| ||||| | |
|
|
| T |
6168837 |
cacaaatcagtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgtttttagagcaaaaggcgaccccccacatt |
6168936 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
6168937 |
tttctactattttcataccaatcgattcaagatttggatattca |
6168980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 6245233 - 6245376
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||| || ||||||| ||||| |||||||| ||||||||||||| |||||||||||| |||| ||||| | |
|
|
| T |
6245233 |
cacaaatcagtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgttttcagagctaaaggcgaccccccacatt |
6245332 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
6245333 |
tttctactattttcataccaatcgattcaagatttggatattca |
6245376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 6142232 - 6142372
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||| || |||||||||||| ||||||| ||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
6142232 |
cacaaatcagtctccaatatcctaacccattcaatttcagagaattttctattcaagagaatccccaatgttttcagagctaatggcaaccccccacact |
6142331 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatat |
151 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
6142332 |
tttctactattttcttgcctatcaattcaagatttggatat |
6142372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 6265637 - 6265780
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||||| | ||||||||||||| | |||||| ||||||||||||| |||| |||||||||||| ||||| | |
|
|
| T |
6265637 |
cacaaatcagtctccaatatctcaacccattcagttacagagaattttctttggaagagaatccccaatgttttcagagttaaaggcaaccccccacatt |
6265736 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
6265737 |
ttgctactattttcttgccaatcaattcaagatttggatattca |
6265780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 8589656 - 8589791
Alignment:
| Q |
20 |
gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga |
119 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||| || |||||||||||||| | |||| || ||||| |||||||||||||||||||||||| || | | |
|
|
| T |
8589656 |
gtctccaatatcttaatccactcatgttgagaaaaatttcttcgcaagagttggcccattgattttacagctaaaggcaaccctccacacttatccagta |
8589755 |
T |
|
| Q |
120 |
ttttcttgccaattgattcaagatttggatattcac |
155 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8589756 |
ttttcttgccagttgattcaagatttggatattcac |
8589791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 13270639 - 13270496
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| | || ||||||||||||| |||||||| ||||||||||||| |||||||||||||| || ||||| | |
|
|
| T |
13270639 |
cacaaatcagtctccaatatcttaacccatttaatttcagagaattttctttgcaagagaatccccaatgttttcagagctaaaggcaaacccccacatt |
13270540 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||||||| ||| || | || || ||||||||||||||||||||| |
|
|
| T |
13270539 |
tttctactattctcataccgatggattcaagatttggatattca |
13270496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 6900043 - 6900177
Alignment:
| Q |
20 |
gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga |
119 |
Q |
| |
|
|||||||| ||||||||||| ||| ||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |
|
|
| T |
6900043 |
gtctccaacatcttaacccaatcaggttcagagaactttctttccaagagattccccaatgttttcagagctaaaggcaacccttcacacttttgtacta |
6900142 |
T |
|
| Q |
120 |
ttttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||| ||||| || |||| ||||||||||||||| |
|
|
| T |
6900143 |
tttgtttgcctatcaattccagatttggatattca |
6900177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 6735908 - 6736052
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||| ||| ||| | |||| | ||||| || | ||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
6735908 |
cacatatcagtctccaatatcttaatccattcatgttcagaaagttttttacgcaaaagttggcccaatgattttatagctagaggcaaccctccacact |
6736007 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcac |
155 |
Q |
| |
|
| || || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6736008 |
tctccactattttcttcccaattgattcaagatttggatattcac |
6736052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 7587793 - 7587921
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||||| ||||||||| ||| ||| |||||||||||||| | ||||| ||||||||||||||| | |
|
|
| T |
7587793 |
cacatatctgtctccaatatcttaaaccattcagcttgagaaaattttctttgcaggagtttccccaatgttttcacagctagaggcaaccctccacatt |
7587892 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattca |
139 |
Q |
| |
|
| ||||| || ||||||||||| |||||| |
|
|
| T |
7587893 |
tctctacaatcttcttgccaatcgattca |
7587921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 6917047 - 6917198
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| ||||||| ||||||| |||| ||||||||||| |||| | | | | || |||||||||||||||||| | |
|
|
| T |
6917047 |
cacaaatcagtctccattatcttaacccactcacgtttagagaatcttctacgcaagagattacccatttctgtcacagttaaaggcaaccctccacatt |
6917146 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcacttgcatt |
162 |
Q |
| |
|
| ||||| |||||||||||||| |||||||||||||| || ||| ||||| |
|
|
| T |
6917147 |
tgtctactattttcttgccaataatttcaagatttggatgttgactcgcatt |
6917198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 7749945 - 7750088
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||| || | ||||||| || |||| | | ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
7749945 |
cacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccccaatgtttctagagctaaaggcaaccccccacact |
7750044 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||||||| ||||||||||| || || || ||||||||||||||| |
|
|
| T |
7750045 |
tttctactattttcttgccgatcgactcgagatttggatattca |
7750088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 8471499 - 8471624
Alignment:
| Q |
28 |
tatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacgattttcttg |
127 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| | ||||| || || ||||||||||| | ||||||||||| |||||||||||| ||||| || || ||| |
|
|
| T |
8471499 |
tatcttatcccattcgtgttgagaatattttttccgcaaaaggtttcccaatgttttcacagctaaaggcagccctccacacttatctacaatatttttg |
8471598 |
T |
|
| Q |
128 |
ccaattgattcaagatttggatattc |
153 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
8471599 |
ccaattgattcaagatttgggtattc |
8471624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 8454572 - 8454715
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||| ||| ||| ||| || | |||| || | ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
8454572 |
cacatatcagtctccaatatattaatccattcatgttcagaaaatgttttccgcagaagttggcccaatgattttatagctaaaggcaaccctccacact |
8454671 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
|||| || ||||| | |||| |||||||||||||||||||||| |
|
|
| T |
8454672 |
tttccactatttttctaccaactgattcaagatttggatattca |
8454715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 6722177 - 6722040
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||||||||||| | |||||||| ||| ||| ||| | ||| ||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6722177 |
cacaaatcagtctccaatatctgatcccattcaagtttagaaaatcgtattctcaaaagattacccaatgttttcagagctaaaggcaaccctccacact |
6722078 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttgga |
148 |
Q |
| |
|
||||| | | ||||||| || || |||||||||||| |
|
|
| T |
6722077 |
tttctgccactttcttgataaccgactcaagatttgga |
6722040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 6554485 - 6554405
Alignment:
| Q |
75 |
ccaatgtttttagagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcac |
155 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| || || |||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
6554485 |
ccaatgattttatagctaaaggcaaccctccacacttgtccactattttcctcccaattgtttcaagatttggatattcac |
6554405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 6591439 - 6591296
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||||||| | |||||| | |||||||||| || |||| || | ||||| |||||||||||||||||| | ||| ||||||| |
|
|
| T |
6591439 |
cacatatcagtctccaatatcttcatccattcggttacagagaattttttttgcaaaagttgccccattgtttttagagctaaaggaatccccccacact |
6591340 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
||||||| ||||||||||| || || ||||| ||||||||||| |
|
|
| T |
6591339 |
tttctactattttcttgcctatcaatacaagagttggatattca |
6591296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 6947187 - 6947325
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||||||||||| | ||||||| |||||| || ||| ||||||| || | |||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
6947187 |
cacatatcagtctccaatatctgcatccattcatcttgagaaaacttttttcgcaaaagttggcccagtgattttatagctaaaggcaaccctccacact |
6947286 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggat |
149 |
Q |
| |
|
| || || |||||| | |||||||||||||| ||||||| |
|
|
| T |
6947287 |
tgtccactattttcctcccaattgattcaagttttggat |
6947325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 6480093 - 6479949
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||||||| | ||||||| |||||| || ||| | ||||| || | ||||||| | ||| |||||||||||||||| |||||| |
|
|
| T |
6480093 |
cacatatcagtctccaatatcttcatccattcatcttgagaaaactttttccgcaaaagttggcccaatgatattatagctaaaggcaacccttcacact |
6479994 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcac |
155 |
Q |
| |
|
| || | |||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
6479993 |
tgtccattattttcctgccaattgattcaagttttggatagtcac |
6479949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 6520273 - 6520129
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| ||||||||||||| | ||||||| |||||| || ||| ||||||| || | ||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
6520273 |
cacatatcagtctccaatatctccatccattcatcttgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacact |
6520174 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcac |
155 |
Q |
| |
|
| || || |||||| ||||||| | |||||| |||||||| |||| |
|
|
| T |
6520173 |
tgtccactattttcatgccaatcgtttcaagttttggatagtcac |
6520129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 6448898 - 6448754
Alignment:
| Q |
11 |
cacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacact |
110 |
Q |
| |
|
|||| ||| |||||||||||||| | ||||||| |||||| || ||| | ||||| | | |||| || ||||| |||||||||||||||||||||| |
|
|
| T |
6448898 |
cacatatcagtctccaatatcttcatccattcatcttgagaaaactttttccgcaaatgttggcccagtgattttatagctaaaggcaaccctccacaca |
6448799 |
T |
|
| Q |
111 |
tttctacgattttcttgccaattgattcaagatttggatattcac |
155 |
Q |
| |
|
| | | |||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
6448798 |
tgttcaatattttcctaccaattgattcaagaattggatattcac |
6448754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 25242256 - 25242067
Alignment:
| Q |
23 |
tccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctac---ga |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
25242256 |
tccaatatcttaacccattcatgttgagagaattttcttcgcaagagattccccgttgtttttacagctaaaggcaacgctccacacttttctactatta |
25242157 |
T |
|
| Q |
120 |
ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactct |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| || ||| ||||| ||||||||| ||||||| |
|
|
| T |
25242156 |
ttttcttgccaattgatgcaagatttggatattcacttgcattccttccgtgaaaagcatgcctctcaaacacactccaacaatcactct |
25242067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 6573394 - 6573267
Alignment:
| Q |
23 |
tccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacgattt |
122 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||||||| || ||||| || | |
|
|
| T |
6573394 |
tccaatatcttaaaccattcaccctgagaaaattttctttgcaagagattccccaatgttttcacggctaaaggcaaccctccacatttgtctacaatct |
6573295 |
T |
|
| Q |
123 |
tcttgccaattgattcaagatttggata |
150 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
6573294 |
ccttgccaatcgattcaagatttggata |
6573267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 7579 - 7444
Alignment:
| Q |
20 |
gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaaccctccacacttttctacga |
119 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||| |||||||| |||| || | |||||| ||||| |||||||||||||||||||||||| || || | |
|
|
| T |
7579 |
gtctccaatatcttaatccattcatgttcagaaaattttctacgcagaagttgtgccaatgattttatagctaaaggcaaccctccacacttgtccacta |
7480 |
T |
|
| Q |
120 |
ttttcttgccaattgattcaagatttggatattcac |
155 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
7479 |
ttttcttcccaattgtttcaagatttggatattcac |
7444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 35140443 - 35140303
Alignment:
| Q |
20 |
gtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgtttttagagctaaaggcaacc------ctccacactttt |
113 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||| |||||| |||||| |||||||||| |||| | ||||| |||| |
|
|
| T |
35140443 |
gtctccaatatcttaacccattcattttcggagaattttctttgcaagagaatccccagtgttttcagagctaaagataacccccccaccccacattttt |
35140344 |
T |
|
| Q |
114 |
ctacgattttcttgccaattgattcaagatttggatattca |
154 |
Q |
| |
|
|||| | |||| | ||||| | ||||||||||||||||||| |
|
|
| T |
35140343 |
ctactagtttcataccaatcgtttcaagatttggatattca |
35140303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University