View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_6 (Length: 487)
Name: NF16630_low_6
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 41588483 - 41588025
Alignment:
| Q |
19 |
cccatgactatgagacatatttgtagacaagcattctgaatgttgcgtatagctttactacctaatctttttgggaaacaagcattctgtttgttgcgta |
118 |
Q |
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| T |
41588483 |
cccatgactatgagacatatttgtagacaagcattctgaatgttgcgtatagctttactacctaatctttttgggaaacaagcattctgtttgttgcgta |
41588384 |
T |
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| Q |
119 |
ttgctttataagctcggagcaccttggctttttaataggaactcttgtcatgcttaacatgaacaatgcacgtattaatctaaagttataaaattgcgta |
218 |
Q |
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| T |
41588383 |
ttgctttataagctcggagcaccttggctttttaataggaactcttgtcatgcttaacatgaacaatgcacgtattaatctaaagttataaaattgcgta |
41588284 |
T |
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| Q |
219 |
ctaaatagaaacaatcatgttaaaaaagttcataacnnnnnnnagtcaaaatgtttatagctcttgtagagtacatttcactttatagaaagtaagtcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
41588283 |
ctaaatagaaacaatcatgttaaaaaagttcatatctttttttagtcaaaatgtttatagctcttgtagggtacatttcactttatataaagtaagtcat |
41588184 |
T |
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| Q |
319 |
a--nnnnnnnnnnnnnnnnnnnnaaagtaaatcttaattgtgataaatataccaccagttgatattttaatctgtgattcataatttattagatattatt |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
41588183 |
attttttttaacgatttttttttaaagtaaatcttaattgtgataaatataccaccagttgatatttcaatctatgattcataatttattagatattatt |
41588084 |
T |
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| Q |
417 |
aagcatataactttaagttctgatattcttacacaatttcttcgcaatcttcacacctt |
475 |
Q |
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| T |
41588083 |
aagcatataactttaagttctgatattcttacacaatttcttcgcaatcttcacacctt |
41588025 |
T |
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