View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16631_high_12 (Length: 339)
Name: NF16631_high_12
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 53268071 - 53267739
Alignment:
| Q |
1 |
taaacaatgaactccgaagcttagtgaagcctggtgatcaatattcttggaggccacaaatgcagtgaaccaaaggatcagatagtatagcaacaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53268071 |
taaacaatgaactccgaagcttagtgaagcctagtgatcaatattcttggaggccacaaatgcagtgaaccaaaggatcagatagtatagcaacaaatgt |
53267972 |
T |
|
| Q |
101 |
gtttagaaaaatcttcgattaaattagaactgaaataacaaactcaacgattggatcaaataaatatgtttacgtgtctagtgagcatcatatcaaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53267971 |
gtttagaaaaatcttcgattaaattagaactgaaataacaaactcaacgattggatcaaataaatatgtttacgtgtctagtgagcatcatatcaaattt |
53267872 |
T |
|
| Q |
201 |
ataatatgttcaatg----gaagtaggtaatgactatttatggcacctacatgaaagatcatgatattttgttgcttatcaataatatttaaatctacct |
296 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53267871 |
ataatgtgttcaatggaaggaagtaggtaatgactatttatggcacctacatgaaagatcatgatattttgttgcttatc---aatatttaaatctacct |
53267775 |
T |
|
| Q |
297 |
gtaagcctgtaacaataaccatattaatattcttgg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53267774 |
gtaagcctgtaacaataaccatattaatattattgg |
53267739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University