View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16631_high_15 (Length: 299)
Name: NF16631_high_15
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 31828485 - 31828749
Alignment:
| Q |
19 |
tcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatgatgttctttatggaggtgattactcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31828485 |
tcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatgatgttctttatggaggtgattactcaa |
31828584 |
T |
|
| Q |
119 |
tttaatgtagttaattatgtaattaactgtttaattaaagcctattagatttgcaatctgaggtttcactcaaaacaagcttcaattgttcttaaattgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31828585 |
tttaatgtagttaattatgtaattaactgtttaattaaagcctattagatttgcaatctgaggtttcactcaaaacaagcttcaattgttcttaaattgt |
31828684 |
T |
|
| Q |
219 |
ttaattagtctttgattcgaaacccaagatccacaacttgtttttgttgttcatgtttcaatttt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31828685 |
ttaattagtctttgattcgaaacccaagatccacaacttgtttttgttgttcatgtttcaatttt |
31828749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 38124317 - 38124245
Alignment:
| Q |
19 |
tcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatg |
91 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| |||||||||| ||| | ||||||||||||| ||||||| |
|
|
| T |
38124317 |
tcatggccaaaaacattggtcaaaaaatggttcaatatcaagaccaaatctcaagactttcaagcagatgatg |
38124245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University