View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_high_16 (Length: 273)
Name: NF16631_high_16
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_high_16 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 24289381 - 24289277
Alignment:
| Q |
169 |
aatactctgtaacaaaacaacatctcctgctgaaagcaacgacgccatttgagtctgccaaagagaaactccaaaatacggtgtggtttcatcgccgact |
268 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24289381 |
aatactttgtaacaaaacaacatctcctgctgaaagcaacgacgccatttgagtctgccaaatagaaactccaaaatacggtgtggtttcatcgccgact |
24289282 |
T |
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| Q |
269 |
tgaat |
273 |
Q |
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||||| |
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| T |
24289281 |
tgaat |
24289277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 24372840 - 24372944
Alignment:
| Q |
169 |
aatactctgtaacaaaacaacatctcctgctgaaagcaacgacgccatttgagtctgccaaagagaaactccaaaatacggtgtggtttcatcgccgact |
268 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24372840 |
aatactttgtaacaaaacaacatctcctgctgaaagcaacgacgccatttgagtctgccaaatagaaactccaaaatacggtgtggtttcatcgccgact |
24372939 |
T |
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| Q |
269 |
tgaat |
273 |
Q |
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||||| |
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| T |
24372940 |
tgaat |
24372944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 24300659 - 24300534
Alignment:
| Q |
17 |
accaagcaaagcaaagaagaccactgaacagttttagcctcaaccacatcaccatatctagtaatcataaaatctaccacatct-----------catta |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
24300659 |
accaagcaaagcaaagaagaccactgaacagttttagcctcaaccacatcaccatatctagtaatcataaaatctaccacatttcaaaacaacaacatta |
24300560 |
T |
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| Q |
106 |
atcatcataacatattcaaatcaatt |
131 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24300559 |
atcatcataacatattcaaatcaatt |
24300534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 24372655 - 24372780
Alignment:
| Q |
17 |
accaagcaaagcaaagaagaccactgaacagttttagcctcaaccacatcaccatatctagtaatcataaaatctaccacatct-----------catta |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
24372655 |
accaagcaaagcaaagaagaccactgaacagttttagcctcaaccacatcaccatatctagtaatcataaaatctaccacatttcaaaacaacaacatta |
24372754 |
T |
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| Q |
106 |
atcatcataacatattcaaatcaatt |
131 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24372755 |
atcatcataacatattcaaatcaatt |
24372780 |
T |
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