View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16631_high_20 (Length: 220)

Name: NF16631_high_20
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16631_high_20
NF16631_high_20
[»] chr2 (2 HSPs)
chr2 (18-217)||(17126022-17126221)
chr2 (143-218)||(17110433-17110509)
[»] chr1 (1 HSPs)
chr1 (143-204)||(33716415-33716476)
[»] chr6 (1 HSPs)
chr6 (113-186)||(31592858-31592931)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 17126022 - 17126221
Alignment:
Q  18 tatgtaatctgaagtgtagtatttgaataaacatatgtacgctgtaaaccctaagcatgaaataatatagaggaatgcaattgttgacgcaagcgcaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17126022 tatgtaatctgaagtgtagtatttgaataaacatatgtacgctgtaaaccctaagcatgaaataatatagaggaatgcaattgttgacgcaagcgcaatt 17126121  T
Q  118 ggccgaacttagttacaaaatattatgtgttcattgtttgcgttttttgaatttttactcttttgaactagggttgatgttctaacactatctgatctgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17126122 ggccgaacttagttacaaaatattatgtgttcattgtttgcgttttttgaatttttactcttttgaactagggttgatgttctaacactatctgatctgt 17126221  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 17110433 - 17110509
Alignment:
Q  143 tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctgatctgtg 218  Q
    |||||||||||||||||||||||   || |||| ||||||| ||||| |||| ||||||||||||||||||||||||    
T  17110433 tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctgatctgtg 17110509  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 33716415 - 33716476
Alignment:
Q  143 tgtgttcattgtttgcgttttttgaatttttactcttttgaactagggttgatgttctaaca 204  Q
    |||||| ||||||||| ||||| | || |||| |||||||||||||||||||||| ||||||    
T  33716415 tgtgtttattgtttgcatttttcgtatctttattcttttgaactagggttgatgtcctaaca 33716476  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 31592858 - 31592931
Alignment:
Q  113 caattggccgaacttagttacaaaatattatgtgttcattgtttgcgttttttgaatttttactcttttgaact 186  Q
    |||||||||||||||  | || ||| || |||||||||||||||| |||||||| || |||| |||| ||||||    
T  31592858 caattggccgaacttcataaccaaacatcatgtgttcattgtttgtgttttttgtatctttattcttgtgaact 31592931  T

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