View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16631_high_8 (Length: 463)
Name: NF16631_high_8
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Original strand, 13005978 - 13006415
Alignment:
| Q |
10 |
aagaatattaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatttccacaggttgcagttacaccacat |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13005978 |
aagaattttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatttccacaggttgcagttacaccacat |
13006077 |
T |
|
| Q |
110 |
ctctttcagtctttctaaatgccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgcaaccacaatgttttttctgatggct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13006078 |
ctctttcagtctttctaaatgccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgcaaccacaatgttttttctgatggct |
13006177 |
T |
|
| Q |
210 |
tgtttttcagtgtggataacaagaattaatggatatcagttcaaacatatctaccttatcccacttggatgatcgacaaagacttaacaacaagatgtga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13006178 |
tgtttttcagtgtggataacaagaattaatggatatcagttcaaacatatctaccttatcccacttggatgatcgacaaagacttaacaacaagatgtga |
13006277 |
T |
|
| Q |
310 |
gagcaacccatgcatcagcgttgaatatatggctcatagtttactgataagtggacatgttgctcgagtggacgcgtagtatttgaacacaaattgttct |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13006278 |
gagcaacccatgcatcagcattgaatatatggctcatagtttactgataagtggacatgttgctcgagtggacgcgtagtatttgaacacaaattgttct |
13006377 |
T |
|
| Q |
410 |
ccgtaaccatataagcttgaataatagaaagatattgt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13006378 |
ccgtaaccatataagcttgaataatagaaagatattgt |
13006415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 13121413 - 13121094
Alignment:
| Q |
17 |
ttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataa-----tatttcca------caggttgcagttacacc |
105 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||| |||||||||||||||||||||||||||||| |||| || || ||| |||||||||| |
|
|
| T |
13121413 |
ttaaggttgttagactaaatgcttggcattgcaattgcattgactggtagttggctatggataagataatattatcaatttagcatgttacagttacacc |
13121314 |
T |
|
| Q |
106 |
acatctctttcagtctttctaaat-gccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgc-----------------aac |
187 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||||||| |||| |||||| | ||||| |||| ||||| | | ||| | ||| |
|
|
| T |
13121313 |
acatctctttcagtctttctcaattgccattctctaaacgacatatttcaatcaaatgggttatcctttgcgaaattttctacggaaaatgaattccaac |
13121214 |
T |
|
| Q |
188 |
cacaatgttttttctgatggcttgtttttcagtgtggataacaagaattaatggatatcagttcaaacatatctaccttatcccacttggatgatcg-ac |
286 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| || ||||||||||| | || |
|
|
| T |
13121213 |
cacaatgttttttctgatagcttggttttcagtgtggataacaagaattaatgtatatccgttccaacatatctaccttagccaacttggatgatggaac |
13121114 |
T |
|
| Q |
287 |
aaagacttaacaacaagatg |
306 |
Q |
| |
|
| |||| || |||||||||| |
|
|
| T |
13121113 |
acagacgtagcaacaagatg |
13121094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 13005218 - 13005285
Alignment:
| Q |
17 |
ttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatt |
84 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
13005218 |
ttaaggtagttagactaagtactttgcactgcagttgcattgactggtagttgggtatggataatatt |
13005285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 13111594 - 13111531
Alignment:
| Q |
108 |
atctctttcagtctttct-aaatgccactctctaa--accacatctttcaaactaatggattat |
168 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||| || ||||||||||| |||||||||||| |
|
|
| T |
13111594 |
atctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattat |
13111531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 18671585 - 18671648
Alignment:
| Q |
108 |
atctctttcagtctttct-aaatgccactctctaa--accacatctttcaaactaatggattat |
168 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||| || ||||||||||| |||||||||||| |
|
|
| T |
18671585 |
atctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattat |
18671648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University