View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_low_1 (Length: 1177)
Name: NF16631_low_1
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 574
Target Start/End: Original strand, 17123463 - 17124032
Alignment:
| Q |
13 |
actattataagaactttctactgtcataattgttcttacatacaaatgtacaagctaactcatctttctccaatcttatgtgaaaacaaaagccgtccgt |
112 |
Q |
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| T |
17123463 |
actattataagaactttctactgtcataattgttcttacatacaaatgtacaagctaactcatctttctccaatcttatgtgaaaacaaaaaccgtcctt |
17123562 |
T |
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| Q |
113 |
agacattcttaaaatttaagaaacatgcaatgtagttgttccaataatgcctttagtagttacgtgtg-aagnnnnnnnnnngtggaaatgggtcccata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
17123563 |
agacattcttaaaatttaagaaacatgcaatgtagttgttccaataatgcctttagtagttacgtgtgaaaaaaaaataaaaatggaaatgggtcccata |
17123662 |
T |
|
| Q |
212 |
cattactctctccttttcctatctctctcaaaattctatataaagaagattgcagttttattccctccacttcaactcacccatcaaaacaacacacctt |
311 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17123663 |
cattactctctcttcttcctatctctctcaaaattctatataaagaagattgcagttttattccctccacttcaactcacccatcaaaacaacacacctt |
17123762 |
T |
|
| Q |
312 |
accttataacattacctttttaatgtttcaaaaactacaacaaaagtgaag-------aaacaatgttaatggagagttttacaaggaggagaaattgtt |
404 |
Q |
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| T |
17123763 |
accttataacattacctttttaatgtttcaaaaactacaacaaaagtgaagaagcaaaaaacaatgttaatggagagttttacaaggaggagaaattgtt |
17123862 |
T |
|
| Q |
405 |
acatannnnnnnnnnnnnnnnnnnnnnnnnatgtcacagcttctgtgacttatgatcataaagctattgtgattaatggaaagagaagaattttgatctc |
504 |
Q |
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| T |
17123863 |
acatattgtttttgtgtttttttgtttgttatgtcacagcttctgtgacttatgatcataaagctattgtgattaatggaaagagaagaattttgatctc |
17123962 |
T |
|
| Q |
505 |
tggttctatccattatcctagaagcacacctcaggtacactccattttaatcatgttcatgatcatgaag |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17123963 |
tggttctatccattatcctagaagcacacctcaggtacactccattttaatcatgttcatgatcatgaag |
17124032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 756 - 970
Target Start/End: Original strand, 17124260 - 17124473
Alignment:
| Q |
756 |
gtgtctgtggttcataggatagagcagagttttgccatttacattgatccacctagctcaatgatccagacaaaaacaaattctcatagataatgtttgt |
855 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17124260 |
gtgtccgtggttcataggatagagcagagttttgccatttacattgatcc-cctagctcaatgattcagacaaaaacaaattctcatagataatgtttgt |
17124358 |
T |
|
| Q |
856 |
tgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaagg |
955 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17124359 |
tgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaagg |
17124458 |
T |
|
| Q |
956 |
aaaagtaataaatga |
970 |
Q |
| |
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||||||||||||||| |
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| T |
17124459 |
aaaagtaataaatga |
17124473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 1074 - 1167
Target Start/End: Original strand, 17124571 - 17124664
Alignment:
| Q |
1074 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg |
1167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17124571 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg |
17124664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 625 - 709
Target Start/End: Original strand, 17124083 - 17124167
Alignment:
| Q |
625 |
attcattcgtgtcacggacttatgaatagcgagttctcaggttcgtgtcacggatacagatactgataccggacaccacacggac |
709 |
Q |
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| T |
17124083 |
attcattcgtgtcacggacttatgaatagcgagttctcaggttcgtgtcacggatacggatactgataccggacaccacacggac |
17124167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 861 - 966
Target Start/End: Complemental strand, 42990257 - 42990152
Alignment:
| Q |
861 |
cagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaaggaaaag |
960 |
Q |
| |
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||||||||||||||| | ||||| || ||||| || || ||| | ||||||||| | || ||||| ||||||||||||||||||||||| | || |||| |
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| T |
42990257 |
cagatgtggccagatcttatacagaaagctaaggaaggtggtttggatgtgattcagacttatgttttttggaatggacatgaaccttcacctggcaaag |
42990158 |
T |
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| Q |
961 |
taataa |
966 |
Q |
| |
|
|||||| |
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|
| T |
42990157 |
taataa |
42990152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 848 - 964
Target Start/End: Original strand, 5229489 - 5229605
Alignment:
| Q |
848 |
atgtttgttgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaacct |
947 |
Q |
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|||||| || ||||||||||||||||| ||| | |||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||| ||| |
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| T |
5229489 |
atgtttcttaatgcagatgtggccagacttatttcaaaaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagcct |
5229588 |
T |
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| Q |
948 |
tctcaaggaaaagtaat |
964 |
Q |
| |
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|||| ||||| ||||| |
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| T |
5229589 |
tctcctggaaatgtaat |
5229605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1074 - 1165
Target Start/End: Original strand, 5229724 - 5229815
Alignment:
| Q |
1074 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta |
1165 |
Q |
| |
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||||||||||| |||||||||||||||||||| ||||| |||| | | ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
5229724 |
cagtattacttcgaagatagatttgacttggtaaagtttgtcaagctagcacaacaagctggtctttatgttcacttgcgtattggtcccta |
5229815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 454 - 546
Target Start/End: Original strand, 5228547 - 5228639
Alignment:
| Q |
454 |
ttatgatcataaagctattgtgattaatggaaagagaagaattttgatctctggttctatccattatcctagaagcacacctcaggtacactc |
546 |
Q |
| |
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||||||||| ||||| |||||||| ||||| | |||||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||| |
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| T |
5228547 |
ttatgatcacaaagcccttgtgattgatggacaaagaagaattttgatatctggctctatccactatccaagaagcacacccgaggtacactc |
5228639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1075 - 1165
Target Start/End: Complemental strand, 52550633 - 52550543
Alignment:
| Q |
1075 |
agtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta |
1165 |
Q |
| |
|
||||||| ||||||||||| | || ||||||||||||||||| ||||| ||||||||||| |||||||||||| | || ||||||||||| |
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| T |
52550633 |
agtattattttgaagataggtacgatttggttaagttcatcaaggtggtgcaacaagctgggctttatgttcatcttcgcattggtcccta |
52550543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 862 - 949
Target Start/End: Original strand, 5450729 - 5450816
Alignment:
| Q |
862 |
agatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttc |
949 |
Q |
| |
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|||||||||||||| | || || ||||||||||| ||||| | ||||||||| |||||||||| || |||||||||||||||||||| |
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| T |
5450729 |
agatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaaccttc |
5450816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 888 - 951
Target Start/End: Complemental strand, 8142484 - 8142421
Alignment:
| Q |
888 |
gctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctc |
951 |
Q |
| |
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|||||||| |||||| | ||||| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
8142484 |
gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctc |
8142421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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