View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_low_11 (Length: 425)
Name: NF16631_low_11
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 39587344 - 39586948
Alignment:
| Q |
17 |
ataagccagaggaaaccattgaagggaagcttgttccaaagaagaaatatggtgtacttgctgttcaggtgaaagtttttaatatttgttcatatttaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39587344 |
ataagccagaggaaaccattgaagggaagcttgttccaaagaagaaatatggtgtacttgctgttcaggtgaaagtttttaatatttgttcatatttaca |
39587245 |
T |
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| Q |
117 |
aaaacattttgatctcaagggattattagaatagtgaaagaattatcatcatcttgtaactgtgcaggcaacttggatgaaatgtggtgggttagtagtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39587244 |
aaaacattttgatctcaagggattattagaatagtgaaagaattattatcatcttgtaactgtgcaggcaacttggatgaaatgtggtgggttagtagtg |
39587145 |
T |
|
| Q |
217 |
gcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttcttgtatcatgggccgagatagcccgatcgagcaataacaagtctttga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39587144 |
gcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttcttgtatcatgggccgagatagcccgatcgagcaataacaagtctttga |
39587045 |
T |
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| Q |
317 |
tcccaacaacacaaccttgttttctaaggtcccttctaaccccaagacacccaccttctatccatccttcactctatgacatgtacatccccatctc |
413 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39587044 |
tcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacacccaccttccatccatccttcactctatgacatgtacatccccatctc |
39586948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 170 - 415
Target Start/End: Complemental strand, 39554081 - 39553836
Alignment:
| Q |
170 |
ttgtaactgtgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttct |
269 |
Q |
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| T |
39554081 |
ttgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttcct |
39553982 |
T |
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| Q |
270 |
tgtatcatgggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttctaaggtcccttctaaccccaagacaccca |
369 |
Q |
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||||||||||||||||||||| || | | ||||||||||||||||||||||||| ||||||||||||| | |||| ||||| |||||| ||| |||| |
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| T |
39553981 |
tgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgccca |
39553882 |
T |
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| Q |
370 |
ccttctatccatccttcactctatgacatgtacatccccatctctg |
415 |
Q |
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| T |
39553881 |
ccttccatccatccttcaatttatgacatgtatgtccccatctctg |
39553836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 170 - 415
Target Start/End: Complemental strand, 39544062 - 39543817
Alignment:
| Q |
170 |
ttgtaactgtgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttct |
269 |
Q |
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|||| ||| ||||| |||| ||||||||||||||||| ||||||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||| || |
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| T |
39544062 |
ttgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattctgcaaacatgttcct |
39543963 |
T |
|
| Q |
270 |
tgtatcatgggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttctaaggtcccttctaaccccaagacaccca |
369 |
Q |
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||||||||||||||||||||| ||| | | |||||||||||||||||||||||||| |||||||||||| | |||| ||| | |||||| ||| |||| |
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| T |
39543962 |
tgtatcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgcaaccttgttttagacggtcacttatgaccccacgacgccca |
39543863 |
T |
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| Q |
370 |
ccttctatccatccttcactctatgacatgtacatccccatctctg |
415 |
Q |
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| T |
39543862 |
ccttccatacatccttcactttatgacatgtatgtccccatctctg |
39543817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 39544913 - 39544840
Alignment:
| Q |
17 |
ataagccagaggaaaccattgaagggaagcttgttccaaagaagaaatatggtgtacttgctgttcaggtgaaa |
90 |
Q |
| |
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|||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |
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| T |
39544913 |
ataatccagatgaaactgttgaagggaagcttgttccaaagaagaaacatggtgtgcttgctgctcaggtgaaa |
39544840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 39554227 - 39554158
Alignment:
| Q |
17 |
ataagccagaggaaaccattgaagggaagcttgttccaaagaagaaatatggtgtacttgctgttcaggt |
86 |
Q |
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| T |
39554227 |
ataatccagatgaaactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggt |
39554158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 17503870 - 17503777
Alignment:
| Q |
199 |
tgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttcttgtatcatgggccgagatagccc |
292 |
Q |
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||||||||| |||||||||| |||| ||||| ||||| ||||| || || ||||| |||||||||| || ||||||||||||||||| |||| |
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| T |
17503870 |
tgtggtgggatagtagtggcatgcacatttgatcatcgcatagcagatgcatattcaacaaacatgttcctagtatcatgggccgagatggccc |
17503777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 17475747 - 17475659
Alignment:
| Q |
199 |
tgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttcttgtatcatgggccgagat |
287 |
Q |
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| T |
17475747 |
tgtggtgggattgtagtggcatgcacatttgatcatcgcatagcagatgcctactcaacaaacatgttcttagtatcatgggccgagat |
17475659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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