View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_low_12 (Length: 420)
Name: NF16631_low_12
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 33814423 - 33814011
Alignment:
| Q |
1 |
gaattgattcaattagaaaagtctattataatacagtgatccttactaagataaaaatcttaagtaacttgcacttaatactatctagcttgaaactacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||| |
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| T |
33814423 |
gaattgattcaattagaaaagtctattataatacagcgatccttactaggataaaaatcttaagtaacttgcacttaatcctaaccagcttgaaactacc |
33814324 |
T |
|
| Q |
101 |
tttaacaaacttcaacta-gatttaacaaatctctaactacatttaacagagacacggctaaaagtggtcagtgaggttactcaagaatctctgctttct |
199 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814323 |
tttaacaaacttcaactaagatttaacagatctctaactacatttaacagagacccggctaaaagtggtcagtgaggttactcaagaatctctgctttct |
33814224 |
T |
|
| Q |
200 |
taatttttgtctagttttcgagttggatttctaacttatatttttaggtattgaaggttaaaagtttt--------tgtgtgatatcatatggtttattg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
33814223 |
taatttttgtctagttttcgagttggatttctaacttatatttttaggtattgaaggttaaaagtttttgtgaatttgtgtgatatcatatggtttagtg |
33814124 |
T |
|
| Q |
292 |
tttttgcttgacccttgacttgtttttgagaactaattgagtctgaaatataggttgggatgccaacgtggaaagacagaggccaggagttgcagtggca |
391 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814123 |
tttttgcttgacccttgacttgtttttgataactaattgagtctgaaatataggttgggatgccaacgtggaaagacagaggccaggagttgcagtggca |
33814024 |
T |
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| Q |
392 |
ccaccaatgattt |
404 |
Q |
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||||||||||||| |
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| T |
33814023 |
ccaccaatgattt |
33814011 |
T |
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