View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16631_low_13 (Length: 386)

Name: NF16631_low_13
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16631_low_13
NF16631_low_13
[»] chr5 (16 HSPs)
chr5 (79-341)||(31493870-31494132)
chr5 (75-369)||(31416280-31416574)
chr5 (77-369)||(31407158-31407441)
chr5 (88-369)||(31475688-31475969)
chr5 (88-369)||(40843070-40843351)
chr5 (75-364)||(31395827-31396116)
chr5 (77-339)||(31643616-31643878)
chr5 (75-295)||(31284854-31285074)
chr5 (77-286)||(31317504-31317713)
chr5 (88-300)||(31279232-31279444)
chr5 (98-305)||(31281560-31281766)
chr5 (14-77)||(31493433-31493496)
chr5 (138-336)||(31368668-31368866)
chr5 (75-229)||(31505630-31505784)
chr5 (174-298)||(31288620-31288742)
chr5 (98-298)||(31330061-31330264)
[»] chr4 (2 HSPs)
chr4 (192-336)||(6037823-6037967)
chr4 (91-271)||(8039298-8039478)
[»] chr3 (1 HSPs)
chr3 (124-272)||(25708597-25708745)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 79 - 341
Target Start/End: Original strand, 31493870 - 31494132
Alignment:
Q  79 atcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagact 178  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31493870 atcctaggtaaaagtaaataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgatagcaaaggcagcacatgttattagact 31493969  T
Q  179 atatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaaga 278  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  31493970 atatgcatctggttttccattcaccactttaccaaagaaaaatgaatagacagaggtgattgttaataccagaaaagctgtatgagctttgaaccgaagc 31494069  T
Q  279 cttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaaga 341  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  31494070 cttcttgagttttgccatatatgtgcatacaaaatcatgaggcagatgatgaaactgaaaaga 31494132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 75 - 369
Target Start/End: Original strand, 31416280 - 31416574
Alignment:
Q  75 aaacatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttatta 174  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||| | || ||| |  ||||    
T  31416280 aaacatcctagataaaagtacataagatcaacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaagaagtacacgaaatta 31416379  T
Q  175 gactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccg 274  Q
    || ||||| ||||||||||||||||||  | ||||||| ||||||||||||| ||||  |||||||| ||||| ||||||||||||||||||||||||||    
T  31416380 gagtatatgcatctggttttccattcataattttatcagagaaaaatgaatagacagcagtgattgtcaatactagaaaagctgtatgagctttgaaccg 31416479  T
Q  275 aagacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaacaaattcc 369  Q
    |||||||||||||||||||||| ||| ||||||||| |||| |||| |||||||||||||| |||||||  ||||||||||||||||||||||||    
T  31416480 aagacttctagagttttgccatgtatttgcatacaaaatcaggaggcagatgatgaaactggaaagagtataaagaattaccttcaacaaattcc 31416574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 77 - 369
Target Start/End: Original strand, 31407158 - 31407441
Alignment:
Q  77 acatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattaga 176  Q
    |||||| ||| ||||||| | |||||| ||||| | ||| ||||||  ||| || |||||||| |  |||||||||| |||||| |||||||  || |      
T  31407158 acatccaaggaaaaagtaaagaagatccacttcgattccacactgagattgccttgacaagctcattgacatgatagcaaaggcggcacatgaaatcaag 31407257  T
Q  177 ctatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaa 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  31407258 ctatatgcatctggttttccattcaccactttatcaaagaaaaatgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaa 31407357  T
Q  277 gacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaacaaattcc 369  Q
    ||||||||||||||| |||||||| ||||||||| |||         ||||||||||||||||||||| |||||| || ||||||||||||||    
T  31407358 gacttctagagtttttccatatatttgcatacaaaatc---------atgatgaaactgaaaagagtgtaaagaaatatcttcaacaaattcc 31407441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 88 - 369
Target Start/End: Original strand, 31475688 - 31475969
Alignment:
Q  88 aaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatc 187  Q
    ||||||| | |||||| ||||| ||||| ||||||  ||| ||||| || || || |||||||||| |||||||||||| |  || || |||||  ||||    
T  31475688 aaaagtaaagaagatccacttcgaatccacactgagattgcctcgagaaactcagtgacatgatagcaaaggcagcacaagaaatgaggctataagcatc 31475787  T
Q  188 tggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagag 287  Q
    |||||||||||| ||||||||||| ||| |||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||     
T  31475788 tggttttccatttaccactttatcgaagtaaaatgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagac 31475887  T
Q  288 ttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaacaaattcc 369  Q
    | || |||||||| | ||||||| ||||||| | | |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  31475888 tgtttccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattcc 31475969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 88 - 369
Target Start/End: Original strand, 40843070 - 40843351
Alignment:
Q  88 aaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatc 187  Q
    ||||||| | |||||| ||||| ||||| || |||  ||| |||||||| || || |||||||||| |||||||||||| |  || || |||||  ||||    
T  40843070 aaaagtaaagaagatccacttcgaatccacaatgagattgcctcgacaaactcagtgacatgatagcaaaggcagcacaagaaatgaggctataagcatc 40843169  T
Q  188 tggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagag 287  Q
    |||||||||||| ||||||||||| ||| |||| ||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||     
T  40843170 tggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagac 40843269  T
Q  288 ttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaacaaattcc 369  Q
    | || |||||||| | ||||||| ||||||| | | |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  40843270 tgtttccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattcc 40843351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 75 - 364
Target Start/End: Complemental strand, 31396116 - 31395827
Alignment:
Q  75 aaacatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttatta 174  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||||||||||  ||||    
T  31396116 aaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaggcagcacatgaaatta 31396017  T
Q  175 gactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccg 274  Q
    |||||||| ||||||||||||||||||  | ||||||  ||||||| ||||| | ||| || ||||| ||||| ||||| |||| |||||||||||| ||    
T  31396016 gactatatgcatctggttttccattcataattttatctgagaaaaaggaataaatagaggtaattgtcaataccagaaacgctgaatgagctttgaatcg 31395917  T
Q  275 aagacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaacaa 364  Q
    | ||||  | |||| ||||||| |   ||||||||| || |||  | ||||||||||||||||||  ||| |||||| || |||| ||||    
T  31395916 atgactagtcgagtgttgccatgttcttgcatacaaaattatggagcagatgatgaaactgaaaactgtgtaaagaactatcttccacaa 31395827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 339
Target Start/End: Original strand, 31643616 - 31643878
Alignment:
Q  77 acatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattaga 176  Q
    |||||| ||| ||||||| | |||||||| |||||||||||||| | ||||  ||||||| ||||| |||||||||| ||||| |||||| |  || ||     
T  31643616 acatccaaggaaaaagtaaagaagatcgaattcaaatccgcactcagtttgcgtcgacaaactaagtgacatgatagcaaaggaagcacaagaaatgagg 31643715  T
Q  177 ctatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaa 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||| | | | ||||| || |||||||| ||||    
T  31643716 ctatatgcatctggttttccattcaccactttatcaaagaaaaatgaatataacgaagtgattgttaataccaaatatgctgtgtgtgctttgaatcgaa 31643815  T
Q  277 gacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaa 339  Q
     |||||| |||  |||||| || | |||| | || |||||||||  |||||||||||||||||    
T  31643816 tacttcttgagggttgccacatttttgcaaataaaatcatgaggctgatgatgaaactgaaaa 31643878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 75 - 295
Target Start/End: Complemental strand, 31285074 - 31284854
Alignment:
Q  75 aaacatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttatta 174  Q
    |||||||| ||  ||||||| | || |||||||||||||||||| ||| |||| |  ||||| || |   ||||||||| ||||| ||||||||  || |    
T  31285074 aaacatccgagaaaaaagtaaagaaaatcgacttcaaatccgcattgagtttgccgtgacaaactcattaacatgatagaaaaggaagcacatgaaatga 31284975  T
Q  175 gactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccg 274  Q
    | |||||| |||||||||||||||| || ||||||||||||||||||||||| |  || |||||||| ||||| | ||| || | |||||||||||||||    
T  31284974 ggctatatgcatctggttttccattaactactttatcaaagaaaaatgaatataatgaggtgattgtcaataccaaaaacgcagcatgagctttgaaccg 31284875  T
Q  275 aagacttctagagttttgcca 295  Q
    ||||||||| |||||||||||    
T  31284874 aagacttctcgagttttgcca 31284854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 286
Target Start/End: Complemental strand, 31317713 - 31317504
Alignment:
Q  77 acatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattaga 176  Q
    |||||| ||| |||| || | |||||| | ||||||||| |||||| |||| || ||||| ||||| ||||| |||| ||||||||||||||  |||| |    
T  31317713 acatcccaggaaaaaataaagaagatcaatttcaaatccccactgagtttgccttgacaaactaagtgacataatagcaaaggcagcacatgaaattaaa 31317614  T
Q  177 ctatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaa 276  Q
    |||||| |||||||||| |||||||  ||||||||||||||||| ||||| |  || |||| ||| ||||| ||||| || | |||||||||||| ||||    
T  31317613 ctatatgcatctggtttcccattcatgactttatcaaagaaaaaggaatagattgaagtgagtgtcaataccagaaatgccgaatgagctttgaatcgaa 31317514  T
Q  277 gacttctaga 286  Q
    |||| |||||    
T  31317513 gactgctaga 31317504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 88 - 300
Target Start/End: Original strand, 31279232 - 31279444
Alignment:
Q  88 aaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatc 187  Q
    ||||||| | |||||| |||||||||||||||||| |||| | |||||| ||||| |||||||||| ||||| ||||||||  || || |||||| ||||    
T  31279232 aaaagtaaagaagatcaacttcaaatccgcactgagtttgccgcgacaaactaagtgacatgatagcaaaggaagcacatgaaatgaggctatatccatc 31279331  T
Q  188 tggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagag 287  Q
     ||||| ||||||| || |||||| |||||||||||||| |  || || ||||| ||||| | | | ||||| || |||||||| ||||||||||| |||    
T  31279332 aggtttcccattcatcaatttatcgaagaaaaatgaatatagcgaggtcattgtcaataccaaatatgctgtgtgtgctttgaatcgaagacttcttgag 31279431  T
Q  288 ttttgccatatat 300  Q
    | | |||||||||    
T  31279432 tgtcgccatatat 31279444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 305
Target Start/End: Complemental strand, 31281766 - 31281560
Alignment:
Q  98 aagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatctggttttcca 197  Q
    |||||| ||| | |||||||||||| |||| ||  |||| || || |||||||||| |||||| |||||||  |||||||| ||| ||||||||||||||    
T  31281766 aagatccactacgaatccgcactgagtttgccttaacaaacttagtgacatgatagcaaaggcggcacatgaaattagactgtatgcatctggttttcca 31281667  T
Q  198 ttcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagagttttgccata 297  Q
    |||| |||||||||||||||||| |||||||  || |||||||||||||| | | | || |  || |||||||| ||||||||||| |||| | ||||||    
T  31281666 ttcatcactttatcaaagaaaaaggaatacagcgaagtgattgttaatacca-atatgccgagtgtgctttgaagcgaagacttcttgagtgtcgccata 31281568  T
Q  298 tatgtgca 305  Q
    ||| ||||    
T  31281567 tatttgca 31281560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 31493433 - 31493496
Alignment:
Q  14 cacagatcatcggatgaattccaccattgacccaactatctaaccctgcatctggtgtaagaaa 77  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31493433 cacagagcatcggatgaattccaccattgacccaactatctaaccctgcatctagtgtaagaaa 31493496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 336
Target Start/End: Complemental strand, 31368866 - 31368668
Alignment:
Q  138 ctaagcgacatgataggaaaggcagcacatgttattagactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtga 237  Q
    ||||| ||||| |||| ||||||||||||||  |||||||||||| |||||||||| |||||||  ||||||| | ||||||| ||||| |   | ||||    
T  31368866 ctaagtgacataatagcaaaggcagcacatgaaattagactatatgcatctggtttcccattcatgactttattagagaaaaaggaatagattaaagtga 31368767  T
Q  238 ttgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactga 336  Q
     ||| ||||| ||||| || | |||||||||||| || ||||||||||| | |||| || | |||||| | || ||||  | | |||||||||||||||    
T  31368766 gtgtcaataccagaaatgccgaatgagctttgaatcggagacttctagaatgttgcaatttctgtgcaaataaaatcaccaagcagatgatgaaactga 31368668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 31505630 - 31505784
Alignment:
Q  75 aaacatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttatta 174  Q
    |||||||| ||  ||||||| | |||||| || ||||||||||||||| |||| | |||||| || ||||||||||||| ||||| ||||| ||  || |    
T  31505630 aaacatccgagaaaaaagtaaagaagatccacctcaaatccgcactgagtttgccgcgacaaactgagcgacatgatagcaaaggaagcacttgaaatga 31505729  T
Q  175 gactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacac 229  Q
    | |||||| |||||||||| ||||| | || ||||||  ||||||| ||||||||    
T  31505730 ggctatatgcatctggtttcccattaatcattttatcggagaaaaaggaatacac 31505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 31288742 - 31288620
Alignment:
Q  174 agactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaacc 273  Q
    ||||||||| ||| |||||||  |||||| |||||||| ||||||||||||||||  || |||||||| ||||| |  |||||||| |||||||||||||    
T  31288742 agactatatgcatatggtttt--attcactactttatcgaagaaaaatgaatacagtgaggtgattgtaaataccaagaaagctgtctgagctttgaacc 31288645  T
Q  274 gaagacttctagagttttgccatat 298  Q
    ||| | |||| |||| || ||||||    
T  31288644 gaatagttcttgagtgtttccatat 31288620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 298
Target Start/End: Complemental strand, 31330264 - 31330061
Alignment:
Q  98 aagatcgacttcaaatccgcactgaatttgg---ctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatctggtttt 194  Q
    |||||||| |||||||||||| ||| ||| |   |||||||| ||||||| | ||| || |||||  |||||||  || ||||||||| |||||||| ||    
T  31330264 aagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggtgtt 31330165  T
Q  195 ccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagagttttgcc 294  Q
      || ||  | ||||||||| ||| ||||||| |  || |||||||  ||||||| | | | |||||| |||| ||||| | ||||||| |||| |||||    
T  31330164 atatgcattaatttatcaaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgacttcttgagtgttgcc 31330065  T
Q  295 atat 298  Q
    ||||    
T  31330064 atat 31330061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 192 - 336
Target Start/End: Original strand, 6037823 - 6037967
Alignment:
Q  192 tttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaata-caagaaaagctgtatgagctttgaaccgaagacttctagagttt 290  Q
    |||||||||| ||||||||  ||||||||||| || || ||||||||||| |||| |||| |||||||||||| ||||||||  ||||||||||||||      
T  6037823 tttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaag-aaagctgtatgaactttgaacaaaagacttctagagtgg 6037921  T
Q  291 tgccatatatgtgcatacaagatcatgaggaagatgatgaaactga 336  Q
    | |||||||| |||||| || ||||||||  |||||||||||||||    
T  6037922 ttccatatatttgcatataaaatcatgagccagatgatgaaactga 6037967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 8039478 - 8039298
Alignment:
Q  91 agtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatctgg 190  Q
    ||||||| ||||  ||||| ||||||||||||||||| ||| ||||  |||| || |||||||||||||  | |||||  |||||||||||| |||| ||    
T  8039478 agtacatgagattcacttcgaatccgcactgaatttgtctcaacaaattaagtgaaatgataggaaaggatgtacatgaaattagactatatgcatcagg 8039379  T
Q  191 ttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaa 271  Q
    |||||||||||  | ||||||| ||||||| ||||| ||||| || |||||  |||| | ||| |||| ||||||||||||    
T  8039378 ttttccattcataattttatcagagaaaaaggaatatacagaagtaattgtcgataccaaaaatgctgaatgagctttgaa 8039298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 272
Target Start/End: Complemental strand, 25708745 - 25708597
Alignment:
Q  124 tttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatctggttttccattcaccactttatcaaagaaaaatga 223  Q
    |||| |||||||| || || |||||||||| ||||||||||||||  || || |||||  ||||||||||  ||||||||||||||||| | | ||| ||    
T  25708745 tttgtctcgacaaactgagtgacatgatagcaaaggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaaga 25708646  T
Q  224 atacacagatgtgattgttaatacaagaaaagctgtatgagctttgaac 272  Q
    ||| || || ||||  || || |||| ||| || |||||||||||||||    
T  25708645 ataaactgaggtgagggtcaaaacaaaaaaggcggtatgagctttgaac 25708597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University