View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_low_16 (Length: 338)
Name: NF16631_low_16
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 92 - 322
Target Start/End: Complemental strand, 50266631 - 50266401
Alignment:
| Q |
92 |
gtgtcaaaatacacacatgttaaaaattaacttatgaccacatactcaaaaaactcaattatctttaaattgtgtcacactacgttgatactattcattc |
191 |
Q |
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| T |
50266631 |
gtgtcaaaatacacacgtgttaaaaattaacttatgaccacatactcaaaaaactcaattatctttaaattgtgtcacactacgttgatactattcattc |
50266532 |
T |
|
| Q |
192 |
attattagaagcatactttgtttggaaattcataaaagatcatcagaggttgaaatacaagtaaaattatgattctcgaagnnnnnnntacgactaaaat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50266531 |
attattagaagcatactttgtttggaaattcataaaagatcatcagaggttgaaatacaagtaaaattatgattctcgaagaaaaaaatacgactaaaat |
50266432 |
T |
|
| Q |
292 |
tataaagtagataactttggaagttctattt |
322 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
50266431 |
tataaagtagataactttggaagttctattt |
50266401 |
T |
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