View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16631_low_21 (Length: 259)

Name: NF16631_low_21
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16631_low_21
NF16631_low_21
[»] chr1 (12 HSPs)
chr1 (57-259)||(9444950-9445152)
chr1 (57-100)||(15182610-15182653)
chr1 (63-101)||(19651410-19651448)
chr1 (57-106)||(7648245-7648293)
chr1 (139-200)||(9425615-9425676)
chr1 (57-105)||(3606121-3606169)
chr1 (57-101)||(8905728-8905772)
chr1 (57-101)||(8934623-8934667)
chr1 (57-101)||(18541078-18541122)
chr1 (57-101)||(18610773-18610817)
chr1 (75-107)||(29721917-29721949)
chr1 (57-101)||(45042261-45042305)
[»] chr4 (17 HSPs)
chr4 (57-107)||(6290456-6290506)
chr4 (57-101)||(12241058-12241102)
chr4 (57-101)||(33820363-33820407)
chr4 (57-101)||(47998594-47998638)
chr4 (63-101)||(42815404-42815442)
chr4 (57-103)||(51039143-51039189)
chr4 (57-103)||(51389101-51389147)
chr4 (57-102)||(3968884-3968929)
chr4 (64-105)||(4974107-4974148)
chr4 (57-102)||(25523225-25523270)
chr4 (64-109)||(33093138-33093183)
chr4 (57-101)||(169529-169573)
chr4 (57-101)||(1562563-1562607)
chr4 (63-107)||(3078941-3078985)
chr4 (57-101)||(35017153-35017197)
chr4 (58-102)||(39010165-39010209)
chr4 (57-101)||(49424847-49424891)
[»] chr7 (4 HSPs)
chr7 (57-102)||(30982381-30982426)
chr7 (57-98)||(42640846-42640887)
chr7 (60-101)||(49128723-49128764)
chr7 (57-101)||(19426580-19426624)
[»] chr8 (6 HSPs)
chr8 (57-109)||(36497653-36497705)
chr8 (57-103)||(35937539-35937585)
chr8 (57-107)||(43873718-43873768)
chr8 (57-106)||(29509261-29509310)
chr8 (57-101)||(26294189-26294233)
chr8 (57-101)||(26307446-26307490)
[»] chr3 (6 HSPs)
chr3 (57-101)||(40159865-40159909)
chr3 (57-99)||(47988512-47988554)
chr3 (57-99)||(47997799-47997841)
chr3 (57-99)||(48007086-48007128)
chr3 (57-106)||(11335329-11335378)
chr3 (57-101)||(51032651-51032695)
[»] chr5 (6 HSPs)
chr5 (57-108)||(39595265-39595316)
chr5 (63-101)||(13547267-13547305)
chr5 (57-102)||(31708369-31708414)
chr5 (57-113)||(36416089-36416145)
chr5 (57-101)||(36572691-36572735)
chr5 (63-103)||(40584249-40584289)
[»] chr6 (4 HSPs)
chr6 (57-103)||(32784736-32784782)
chr6 (57-101)||(8778899-8778943)
chr6 (57-105)||(17835608-17835656)
chr6 (57-101)||(28965867-28965911)
[»] chr2 (10 HSPs)
chr2 (57-103)||(34372845-34372891)
chr2 (57-98)||(19631389-19631430)
chr2 (57-98)||(19828290-19828331)
chr2 (57-101)||(3091741-3091785)
chr2 (57-101)||(11980651-11980695)
chr2 (57-101)||(14140364-14140408)
chr2 (64-100)||(15448152-15448188)
chr2 (57-101)||(16754396-16754440)
chr2 (57-101)||(31635837-31635881)
chr2 (63-103)||(34134804-34134844)
[»] scaffold0049 (1 HSPs)
scaffold0049 (57-101)||(72196-72240)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 57 - 259
Target Start/End: Complemental strand, 9445152 - 9444950
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaaatattatcttatattctcaacatattgacacctaatgtcattggaaaccc 156  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9445152 ttgtcaaaaagttgttacaaaatggttgtacgaatatcatttctcataaaatattatcttatattctcaacatattgacccctaatgtcattggaaaccc 9445053  T
Q  157 taattgtcttctttttaattctctgcaaaactctagtttattaacaataaatatgctagctaaggtcttacagcaactgggacaataaaatggtttattt 256  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9445052 taatcgtcttctttttgattctctgcaaaactctagtttattaataataaatatgctagctaaggtcttacagcaactgggacaataaaatggtttattt 9444953  T
Q  257 ttt 259  Q
    |||    
T  9444952 ttt 9444950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 15182610 - 15182653
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttct 100  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||    
T  15182610 ttgtcaaaaagttgttagaaaatagttgtacaaatatcatttct 15182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 19651448 - 19651410
Alignment:
Q  63 aaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  19651448 aaaagttgtcacaaaatggttgtaggaatatcatttctc 19651410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 7648293 - 7648245
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaa 106  Q
    |||||||||| ||||||||||||| |||||  ||||||||||||||||||    
T  7648293 ttgtcaaaaa-ttgttacaaaataattgtacaaatatcatttctcataaa 7648245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 9425676 - 9425615
Alignment:
Q  139 taatgtcattggaaaccctaattgtcttctttttaattctctgcaaaactctagtttattaa 200  Q
    |||||||||||||||| ||||  |||| |||| | ||||||| |||||| ||||||||||||    
T  9425676 taatgtcattggaaactctaaccgtctcctttattattctctccaaaaccctagtttattaa 9425615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 3606121 - 3606169
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataa 105  Q
    ||||||||||||||||| ||| | ||||||  |||||||||||||||||    
T  3606121 ttgtcaaaaagttgttagaaattggttgtacaaatatcatttctcataa 3606169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 8905772 - 8905728
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||| ||||||| ||||||||||||  |||||||||||||    
T  8905772 ttgtcaaaaggttgttaaaaaatagttgtacaaatatcatttctc 8905728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 8934623 - 8934667
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||| ||||||||||||||  ||||| |||||||    
T  8934623 ttgtcaaaaagttgtcacaaaatagttgtacaaatataatttctc 8934667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 18541078 - 18541122
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  18541078 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 18541122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 18610817 - 18610773
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    |||| |||||||||| ||||||||||||||  |||||||||||||    
T  18610817 ttgtaaaaaagttgtcacaaaatagttgtacaaatatcatttctc 18610773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 29721949 - 29721917
Alignment:
Q  75 aaaatagttgtaggaatatcatttctcataaaa 107  Q
    |||||||||||| ||||||||||||||||||||    
T  29721949 aaaatagttgtatgaatatcatttctcataaaa 29721917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 45042305 - 45042261
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    |||||||||| |||||| ||||||||||||  |||||||||||||    
T  45042305 ttgtcaaaaaattgttagaaaatagttgtacaaatatcatttctc 45042261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 6290506 - 6290456
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaaa 107  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||| |||||    
T  6290506 ttgtcaagaagttgttacaaaatagttgtacaaatatcatttctcttaaaa 6290456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 12241102 - 12241058
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||    
T  12241102 ttgtcaaaaagttgttagaaaatagttgtacaaatatcatttctc 12241058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 33820363 - 33820407
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||    
T  33820363 ttgtcaaaaagttgttagaaaatagttgtacaaatatcatttctc 33820407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 47998638 - 47998594
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||    
T  47998638 ttgtcaaaaagttgttacaaaatggttgtacaaatatcatttctc 47998594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 42815442 - 42815404
Alignment:
Q  63 aaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  42815442 aaaagttgttacaaaatagttgtacaaatatcatttctc 42815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 51039143 - 51039189
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcat 103  Q
    ||||||||||||||| ||||| ||||||||  |||||||||||||||    
T  51039143 ttgtcaaaaagttgtcacaaagtagttgtacaaatatcatttctcat 51039189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 51389101 - 51389147
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcat 103  Q
    ||||||||||||||||||||| | ||||||  |||||||||||||||    
T  51389101 ttgtcaaaaagttgttacaaagtggttgtacaaatatcatttctcat 51389147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 3968929 - 3968884
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctca 102  Q
    ||||||||||||||||| ||||| ||||||  ||||||||||||||    
T  3968929 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctca 3968884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 4974148 - 4974107
Alignment:
Q  64 aaagttgttacaaaatagttgtaggaatatcatttctcataa 105  Q
    |||||||||| ||||||||||||  |||||||||||||||||    
T  4974148 aaagttgttaaaaaatagttgtacaaatatcatttctcataa 4974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 25523225 - 25523270
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctca 102  Q
    ||||||||||||||| | ||||||||||||  ||||||||||||||    
T  25523225 ttgtcaaaaagttgtgagaaaatagttgtacaaatatcatttctca 25523270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 33093138 - 33093183
Alignment:
Q  64 aaagttgttacaaaatagttgtaggaatatcatttctcataaaata 109  Q
    |||||||| ||||||||||||||  ||||||||||||| |||||||    
T  33093138 aaagttgtcacaaaatagttgtacaaatatcatttctcttaaaata 33093183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 169529 - 169573
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||| ||||||| ||||||  |||||||||||||    
T  169529 ttgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 1562563 - 1562607
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  1562563 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 1562607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 3078941 - 3078985
Alignment:
Q  63 aaaagttgttacaaaatagttgtaggaatatcatttctcataaaa 107  Q
    |||||||||||||||||  |||||  |||||||||||||||||||    
T  3078941 aaaagttgttacaaaatgattgtacaaatatcatttctcataaaa 3078985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 35017197 - 35017153
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    |||| |||||||||| ||||||||||||||  |||||||||||||    
T  35017197 ttgtaaaaaagttgtcacaaaatagttgtacaaatatcatttctc 35017153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 39010165 - 39010209
Alignment:
Q  58 tgtcaaaaagttgttacaaaatagttgtaggaatatcatttctca 102  Q
    |||||||||||||| ||||||| ||||||  ||||||||||||||    
T  39010165 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctca 39010209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 49424847 - 49424891
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||||||||  ||||||  |||||||||||||    
T  49424847 ttgtcaaaaagttgttacaaaaaggttgtacaaatatcatttctc 49424891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 30982381 - 30982426
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctca 102  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||    
T  30982381 ttgtcaaaaagttgtcacaaaatagttctacgaatatcatttctca 30982426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 42640887 - 42640846
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcattt 98  Q
    ||||||||||||||||| ||||||||||||  ||||||||||    
T  42640887 ttgtcaaaaagttgttagaaaatagttgtacaaatatcattt 42640846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 49128764 - 49128723
Alignment:
Q  60 tcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    |||||||||||||||||||| ||||||  |||||||||||||    
T  49128764 tcaaaaagttgttacaaaatggttgtataaatatcatttctc 49128723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 19426624 - 19426580
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||| ||||||| ||||||  |||||||||||||    
T  19426624 ttgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 19426580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 36497705 - 36497653
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaaata 109  Q
    ||||| ||||||||| ||||||||||||||  ||||||||||||| |||||||    
T  36497705 ttgtctaaaagttgtcacaaaatagttgtacaaatatcatttctcttaaaata 36497653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 35937539 - 35937585
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcat 103  Q
    ||||| ||||||||||||||||| ||||||  |||||||||||||||    
T  35937539 ttgtccaaaagttgttacaaaatggttgtacaaatatcatttctcat 35937585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 43873718 - 43873768
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaaa 107  Q
    |||||||||| |||| ||||||| ||||||  |||||||||||||||||||    
T  43873718 ttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctcataaaa 43873768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 29509310 - 29509261
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaa 106  Q
    |||||||||||||||  |||||| ||||||  ||||||||||||||||||    
T  29509310 ttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctcataaa 29509261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 26294233 - 26294189
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||| ||||||| ||||||  |||||||||||||    
T  26294233 ttgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctc 26294189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 26307490 - 26307446
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||| ||||||| ||||||  |||||||||||||    
T  26307490 ttgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctc 26307446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 40159865 - 40159909
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||    
T  40159865 ttgtcaaaaagttgttagaaaatagttgtacaaatatcatttctc 40159909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 47988512 - 47988554
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttc 99  Q
    ||||||||||||||||| ||||||||||||  |||||||||||    
T  47988512 ttgtcaaaaagttgttagaaaatagttgtacaaatatcatttc 47988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 47997799 - 47997841
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttc 99  Q
    ||||||||||||||||| ||||||||||||  |||||||||||    
T  47997799 ttgtcaaaaagttgttagaaaatagttgtacaaatatcatttc 47997841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 48007086 - 48007128
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttc 99  Q
    ||||||||||||||||| ||||||||||||  |||||||||||    
T  48007086 ttgtcaaaaagttgttagaaaatagttgtacaaatatcatttc 48007128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 11335329 - 11335378
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaa 106  Q
    ||||||||||||||||| ||||| ||||||  ||||||||||||| ||||    
T  11335329 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctcttaaa 11335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 51032651 - 51032695
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  51032651 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 51032695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 39595316 - 39595265
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaaat 108  Q
    ||||||||||||||| ||||| | ||||||  ||||||||||||||||||||    
T  39595316 ttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctcataaaat 39595265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 13547267 - 13547305
Alignment:
Q  63 aaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  13547267 aaaaattgttacaaaatagttgtatgaatatcatttctc 13547305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 31708414 - 31708369
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctca 102  Q
    ||||||||||||||||| ||||| ||||||  ||||||||||||||    
T  31708414 ttgtcaaaaagttgttataaaatggttgtacaaatatcatttctca 31708369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 36416089 - 36416145
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataaaatattat 113  Q
    |||||||||| |||||| ||||| ||||||  ||||||||||||||| || ||||||    
T  36416089 ttgtcaaaaaattgttagaaaatggttgtacaaatatcatttctcattaactattat 36416145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 36572735 - 36572691
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||| ||||||||||| ||  |||||||||||||    
T  36572735 ttgtcaaaaagttgtcacaaaatagttatacaaatatcatttctc 36572691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 40584249 - 40584289
Alignment:
Q  63 aaaagttgttacaaaatagttgtaggaatatcatttctcat 103  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  40584249 aaaagttgtaaaaaaatagttgtagaaatatcatttctcat 40584289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 32784782 - 32784736
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcat 103  Q
    ||||||||||||||| |||||||| |||||  |||||||||||||||    
T  32784782 ttgtcaaaaagttgtaacaaaataattgtacaaatatcatttctcat 32784736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 8778899 - 8778943
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  8778899 ttgtcaaaaagttgttaaaaaatggttgtacaaatatcatttctc 8778943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 17835656 - 17835608
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcataa 105  Q
    ||||||||||||||||| ||||  ||||||  |||||||||||||||||    
T  17835656 ttgtcaaaaagttgttagaaaagggttgtacaaatatcatttctcataa 17835608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 28965867 - 28965911
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||| ||||||| ||||||  |||||||||||||    
T  28965867 ttgtcaaaaagttgtaacaaaatggttgtacaaatatcatttctc 28965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 34372891 - 34372845
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctcat 103  Q
    |||||||||| |||||| |||||| |||||| |||||||||||||||    
T  34372891 ttgtcaaaaaattgttagaaaataattgtagaaatatcatttctcat 34372845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 19631430 - 19631389
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcattt 98  Q
    |||||||||| |||||||||||||||||||  ||||||||||    
T  19631430 ttgtcaaaaaattgttacaaaatagttgtacaaatatcattt 19631389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 19828331 - 19828290
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcattt 98  Q
    |||||||||| |||||||||||||||||||  ||||||||||    
T  19828331 ttgtcaaaaaattgttacaaaatagttgtacaaatatcattt 19828290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 3091785 - 3091741
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||| | ||||||||||||||  |||||||||||||    
T  3091785 ttgtcaaaaagttatcacaaaatagttgtacaaatatcatttctc 3091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 11980695 - 11980651
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  11980695 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 11980651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 14140364 - 14140408
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||| ||||| ||||||||  |||||||||||||    
T  14140364 ttgtcaaaaagttgtcacaaattagttgtacaaatatcatttctc 14140408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 15448188 - 15448152
Alignment:
Q  64 aaagttgttacaaaatagttgtaggaatatcatttct 100  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  15448188 aaagttgtcacaaaattgttgtaggaatatcatttct 15448152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 16754440 - 16754396
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  16754440 ttgtcaaaaagttgttagaaaattgttgtataaatatcatttctc 16754396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 31635837 - 31635881
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  31635837 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 31635881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 34134804 - 34134844
Alignment:
Q  63 aaaagttgttacaaaatagttgtaggaatatcatttctcat 103  Q
    ||||||||||||||||| ||||||  |||||||||||||||    
T  34134804 aaaagttgttacaaaatggttgtaaaaatatcatttctcat 34134844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 72196 - 72240
Alignment:
Q  57 ttgtcaaaaagttgttacaaaatagttgtaggaatatcatttctc 101  Q
    ||||| ||||||||||||||||| ||||||  |||||||||||||    
T  72196 ttgtctaaaagttgttacaaaatggttgtacaaatatcatttctc 72240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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