View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_low_22 (Length: 246)
Name: NF16631_low_22
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 5890159 - 5889995
Alignment:
| Q |
72 |
acaatctataggaataatagcagaatgagtagtcaaattacaaatttagtccatgtaattaacaaagaagtggttgtttgaaaatcaaatcctaagtgtt |
171 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5890159 |
acaatctgtaggaaaaatagcagaatgagtagtcaaattacaaatttcttccatgtaattaacaaagaagtggttgtttgaaaatcaaatcctaagcgtt |
5890060 |
T |
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| Q |
172 |
tatctttatgtgtttcaaatttgatttgattcttgaaagagaaggccaacattgtttcttccttt |
236 |
Q |
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| T |
5890059 |
tatctttatgtgtttcaaatttgatttgattcttgaaagggaaggccaacattgttagttccttt |
5889995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 5890231 - 5890185
Alignment:
| Q |
19 |
gatatagccaccaacagctctcttgattatatcccctaagaacttgc |
65 |
Q |
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| T |
5890231 |
gatatagccacgaatagttctcttgattatatcccttaagaacttgc |
5890185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 2004037 - 2003930
Alignment:
| Q |
74 |
aatctataggaataatagcagaatgag--tagtcaaa-ttacaaatttagtccatgtaattaacaaagaagtggttgtttgaaaatcaaatcctaagtgt |
170 |
Q |
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| T |
2004037 |
aatctatagcaataatagcagaatgagagtagtcaaaattacaaacttaatctttgtaatttacaaagaagggattgtttgaaaatcaaatcctaagtgt |
2003938 |
T |
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| Q |
171 |
ttatcttt |
178 |
Q |
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| T |
2003937 |
atatcttt |
2003930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 2003894 - 2003847
Alignment:
| Q |
186 |
tcaaatttgatttgattcttgaaagagaaggccaacattgtttcttcc |
233 |
Q |
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| T |
2003894 |
tcaaatttgatttgattcttgaaagggaaggccaacattgtttcttcc |
2003847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 14293518 - 14293569
Alignment:
| Q |
184 |
tttcaaatttgatttgattcttgaaagagaaggccaacattgtttcttcctt |
235 |
Q |
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| T |
14293518 |
tttcaaatttgatttgattcttgaaagggaaggccaacattgtttctacctt |
14293569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 2007423 - 2007378
Alignment:
| Q |
19 |
gatatagccaccaacagctctcttgattatatcccctaagaacttg |
64 |
Q |
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| T |
2007423 |
gatatagccaccaacagccctcttgattatatctcctaagaacttg |
2007378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 1969925 - 1969963
Alignment:
| Q |
19 |
gatatagccaccaacagctctcttgattatatcccctaa |
57 |
Q |
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| T |
1969925 |
gatatagccaccaacaactctcttgattatatctcctaa |
1969963 |
T |
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