View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_low_25 (Length: 220)
Name: NF16631_low_25
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 17126022 - 17126221
Alignment:
| Q |
18 |
tatgtaatctgaagtgtagtatttgaataaacatatgtacgctgtaaaccctaagcatgaaataatatagaggaatgcaattgttgacgcaagcgcaatt |
117 |
Q |
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| T |
17126022 |
tatgtaatctgaagtgtagtatttgaataaacatatgtacgctgtaaaccctaagcatgaaataatatagaggaatgcaattgttgacgcaagcgcaatt |
17126121 |
T |
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| Q |
118 |
ggccgaacttagttacaaaatattatgtgttcattgtttgcgttttttgaatttttactcttttgaactagggttgatgttctaacactatctgatctgt |
217 |
Q |
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| T |
17126122 |
ggccgaacttagttacaaaatattatgtgttcattgtttgcgttttttgaatttttactcttttgaactagggttgatgttctaacactatctgatctgt |
17126221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 17110433 - 17110509
Alignment:
| Q |
143 |
tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctgatctgtg |
218 |
Q |
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| T |
17110433 |
tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctgatctgtg |
17110509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 33716415 - 33716476
Alignment:
| Q |
143 |
tgtgttcattgtttgcgttttttgaatttttactcttttgaactagggttgatgttctaaca |
204 |
Q |
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| T |
33716415 |
tgtgtttattgtttgcatttttcgtatctttattcttttgaactagggttgatgtcctaaca |
33716476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 31592858 - 31592931
Alignment:
| Q |
113 |
caattggccgaacttagttacaaaatattatgtgttcattgtttgcgttttttgaatttttactcttttgaact |
186 |
Q |
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| T |
31592858 |
caattggccgaacttcataaccaaacatcatgtgttcattgtttgtgttttttgtatctttattcttgtgaact |
31592931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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