View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_low_4 (Length: 592)
Name: NF16631_low_4
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 16 - 573
Target Start/End: Complemental strand, 3543786 - 3543228
Alignment:
| Q |
16 |
aatactctagaggtttagaaaattgagttgaacctcctccttatataaagctttaatttcacaaaataaaaattaatttgcccaaatcaatcagaaaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543786 |
aatactctagaggtttagaaaattgagttgaacctcctccttatataaagctttaatttcacaaaataaaaattaatttgcccaaatcaatcagaaaaat |
3543687 |
T |
|
| Q |
116 |
attactcatttaacacacacctaaatttaccaattaaacccttgataaagaaattcatagtctatactttatacatataggataagtnnnnnnnnttaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |
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| T |
3543686 |
attactcatttaacacacacctaaatttaccaattaaaccct-gataaagaaattcacagtctatactttatacatataggataagtaaaaaaa-ttcat |
3543589 |
T |
|
| Q |
216 |
gttaaccacaagtcaagatatcaatattgatcggtccaagtgaaactgaactcagatccttaagaggttcgagccttgcggattggaaaaaagtggatgg |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3543588 |
gtcaaccacaagtcaagatatcaatattgatcggtccaagtgaaactgaactcagatccttaagaggttcgagccttgcggattggaaaaaagtggttgg |
3543489 |
T |
|
| Q |
316 |
gacgggaagccctattaaaggtggctcacgatgttcctcatcagaaattagtcatccgcaaagtcagtgaatacttcccttaacaaattaaagaaaaaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543488 |
gacgggaagccctattaaaggtggctcacgatgttcctcatcagaaattagtcatccgcaaagtcagtgaatacttcccttaacaaattaaagaaaaaca |
3543389 |
T |
|
| Q |
416 |
cacatcatcatctactcatctaccaacaaaacaaaaccctgaccgatacat---gagatacaaagtatacatatttgttaaattgaattatttatttaag |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543388 |
cacatcatcatctactcatctaccaacaaaacaaaaccctgaccgatacatacagagatacaaagtatacatatttgttaaattgaattatttatttaag |
3543289 |
T |
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| Q |
513 |
tcatatgtttcattaaggtacataattacagattataatccaagtacaaatacacacacag |
573 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543288 |
tcatatgtttcattaaggtacataattacagattataatccaagtacaaatacacacacag |
3543228 |
T |
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