View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16631_low_7 (Length: 573)
Name: NF16631_low_7
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 560
Target Start/End: Complemental strand, 28276762 - 28276208
Alignment:
| Q |
15 |
actttttgcatctttgaaattcacatgacaatcaaacaattttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttcttt |
114 |
Q |
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| T |
28276762 |
actttttgtatctttgaaattcacatgacaatcaaacatttttctaatgagcttgttcgtgacttcgaaatgctataaatgaatcggagagctcttcttt |
28276663 |
T |
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| Q |
115 |
gaaatgctatatat-tcataa-------------ccttgatcatatacatatgtctaaaataccaattggtaatatacaaaaggaatgattgtgtgtgtc |
200 |
Q |
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| T |
28276662 |
gaaatgctatataactaattaggtatgacctgtcccttgatcatatacatatgtctaaaataccaattg-taatatacaaaaggaatgattgtgtgtgtc |
28276564 |
T |
|
| Q |
201 |
cactggtctaatcaagttgatagtcacaggtacgaccttagtaacagatttactaaaaaatatccaaaatacatgaccccaaaaaagataagctacgtca |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28276563 |
cactggtctaatcaacttgatagtcacaggtacgaccttagtaacagatttactaaaaaatatccaaaatacatgaccccaaaaa-gataagctacgtca |
28276465 |
T |
|
| Q |
301 |
taacgaatataaacaggtaagccaataaccctatgtagtatgtacctctaaccaagtcaatcaacagaggtggtgactttggctacataattgtcatcct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28276464 |
taacgaatataaacaggtaagccaataaccctatgta---tgtacctctaaccaagtcaatcaacagaggtggtgactttggctacataattgtcatcct |
28276368 |
T |
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| Q |
401 |
gaaaaataactaccatatattatcttcagcaacctctcctatagattgatctacatgtcctacatcgccaacattgatatatttagtatcctttaaaatt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28276367 |
gaaaaataactaccatatattatcttcagcaacctctcctatagattgatctacatgtcctacatcgtcaacattgatatatttagtatcctttaaaatt |
28276268 |
T |
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| Q |
501 |
gtaatagttgaagcatatggtctgccattgccagagagcaaagcccatatatccacaggt |
560 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28276267 |
gtaacagttgaagcatatggtctgccattgccagagggcaaagcccatatatccacaggt |
28276208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 28297408 - 28297491
Alignment:
| Q |
28 |
ttgaaattcacatgacaatcaaacaattttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttc |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28297408 |
ttgaaattcacatgacaatcaaacatttttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttc |
28297491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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