View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16631_low_8 (Length: 568)
Name: NF16631_low_8
Description: NF16631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16631_low_8 |
 | |
|
| [»] chr8 (10 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 182 - 568
Target Start/End: Complemental strand, 1963976 - 1963588
Alignment:
| Q |
182 |
ataacggatgaccaaacacat--tgaagatacgtaaactgtgaaatattaggccaaataaggtgatcttaataatacatattgtcataaaacttgttttt |
279 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963976 |
ataacggatgaccaaacacatattgaagatacgtaaactgtgaaatataaggccaaataaggtgatcttaataatacatattgtcataaaacttgttttt |
1963877 |
T |
|
| Q |
280 |
ctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattcctt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963876 |
ctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattcctt |
1963777 |
T |
|
| Q |
380 |
catattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactctt |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963776 |
catattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactctt |
1963677 |
T |
|
| Q |
480 |
ggcctcagtcccacttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacacc |
568 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
1963676 |
ggcctcagtcccacttttaggccttcacagagcaaaactgcatttgttctctgctcagcatacagaggccaagtgattagtggcacacc |
1963588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 250 - 568
Target Start/End: Original strand, 2017907 - 2018224
Alignment:
| Q |
250 |
ataatacatattgtcataaaacttgtttttctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatg |
349 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |
|
|
| T |
2017907 |
ataatacatattgtcatacaacttgtttttctataccaaattt-ctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatg |
2018005 |
T |
|
| Q |
350 |
tacactactagcagcttctttaaattccttcatattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctacc |
449 |
Q |
| |
|
| ||||| |||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
2018006 |
tgcactattagcagattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtacc |
2018105 |
T |
|
| Q |
450 |
ctttccacaatgccattctcgttaactcttggcctcagtcccacttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggcc |
549 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018106 |
ttttccacaatgccattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggcc |
2018205 |
T |
|
| Q |
550 |
atgtgattagtggcacacc |
568 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2018206 |
atgtgattagtggcacacc |
2018224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 242 - 568
Target Start/End: Original strand, 2014515 - 2014841
Alignment:
| Q |
242 |
tgatcttaataatacatattgtcataaaacttgtttttctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatct |
341 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||| ||| || || |
|
|
| T |
2014515 |
tgatcttaatattgcatattgtcattaaacttgtttttcaataccaaagtttctccacttaagaactaattgagaaagagtctttgtagcagacccgtca |
2014614 |
T |
|
| Q |
342 |
tctttatgtacactactagcagcttctttaaattccttcatattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaa |
441 |
Q |
| |
|
||||||||| ||||| |||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2014615 |
tctttatgtgcactattagcagattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaa |
2014714 |
T |
|
| Q |
442 |
tttctaccctttccacaatgccattctcgttaactcttggcctcagtcccacttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaa |
541 |
Q |
| |
|
||| |||| |||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014715 |
tttgtaccttttccacaatgccattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaa |
2014814 |
T |
|
| Q |
542 |
tagaggccatgtgattagtggcacacc |
568 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2014815 |
tagaggccatgtgattagtggcacacc |
2014841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 294 - 568
Target Start/End: Original strand, 2004167 - 2004441
Alignment:
| Q |
294 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
393 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| || | ||||| |||||| ||||||||||| ||||| |||| |
|
|
| T |
2004167 |
ctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattcttttaattccttcatgttattgcgca |
2004266 |
T |
|
| Q |
394 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
493 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||| || ||||| |||| ||||| |||||| |
|
|
| T |
2004267 |
atttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccctcaatcccac |
2004366 |
T |
|
| Q |
494 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacacc |
568 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2004367 |
ttttagtccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccatgttattagtggcacacc |
2004441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 294 - 568
Target Start/End: Complemental strand, 1969474 - 1969200
Alignment:
| Q |
294 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
393 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||| ||||||||||||||| | || | |||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
1969474 |
ctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaattccttcatgttattgcgca |
1969375 |
T |
|
| Q |
394 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
493 |
Q |
| |
|
||| |||||||||| ||||||||||||| |||||||| || | ||| ||| | |||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
1969374 |
acttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaactcttggcctcagtcccac |
1969275 |
T |
|
| Q |
494 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacacc |
568 |
Q |
| |
|
||||||||||||||||| |||||| |||||| || ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
1969274 |
ttttaggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacacc |
1969200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 274 - 568
Target Start/End: Original strand, 2007528 - 2007821
Alignment:
| Q |
274 |
gtttttctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaa |
373 |
Q |
| |
|
||||||||| |||||| || |||||||| ||||||| |||||||| ||| ||||||| ||||||||||||||| | || | |||||||||||| || |
|
|
| T |
2007528 |
gtttttctacaccaaattt-ctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaa |
2007626 |
T |
|
| Q |
374 |
ttccttcatattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgtta |
473 |
Q |
| |
|
||||||||| ||||| || | |||| |||| || || |||||||||||| ||||||||| || ||||| |||||||||||||| |||||||| || ||| |
|
|
| T |
2007627 |
ttccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcatta |
2007726 |
T |
|
| Q |
474 |
actcttggcctcagtcccacttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacacc |
568 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2007727 |
acacttgccctcagtcccacttttagtccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccacgtgattaacggcacacc |
2007821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 294 - 568
Target Start/End: Complemental strand, 2437268 - 2437000
Alignment:
| Q |
294 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
393 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| || || || |||||||||||| | ||| ||||||||| | | | |
|
|
| T |
2437268 |
ctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttgagtgcattagaagcagcttcttttagttctttcatattactccac- |
2437170 |
T |
|
| Q |
394 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
493 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
2437169 |
-tttag----ttcttctccttccatgagacacttgatcaccttagcaacctctaccctttccacaatgccattttcatgaactcttggcctcagtcccac |
2437075 |
T |
|
| Q |
494 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacacc |
568 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
2437074 |
ttttagtccctcactcaacaaaaccgaattcgttctctgctcggcaaaaagaggccatgtgattagtggcacacc |
2437000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 294 - 565
Target Start/End: Original strand, 2011162 - 2011433
Alignment:
| Q |
294 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
393 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||| || || || |||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
2011162 |
ctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttcttttaattccttcatattattgtgca |
2011261 |
T |
|
| Q |
394 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
493 |
Q |
| |
|
|||| ||| ||||| ||||||||||||| |||||||| || ||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
2011262 |
atttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaataccattttcgttaactcttggcctcagtcccac |
2011361 |
T |
|
| Q |
494 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcac |
565 |
Q |
| |
|
||| ||||| ||| ||| |||||| |||||| ||| ||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
2011362 |
tttaaggccctcagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcac |
2011433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 294 - 565
Target Start/End: Complemental strand, 1965532 - 1965261
Alignment:
| Q |
294 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
393 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||| ||| ||||||||||| || || | |||| || |||| || |||||||||||||| ||| |
|
|
| T |
1965532 |
ctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaactccttcatattattgtgca |
1965433 |
T |
|
| Q |
394 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
493 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||| || ||||| || |||||||| ||||| || || |||||||||||||| ||||||||||| |
|
|
| T |
1965432 |
atttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgttttcgttaactcttggtctcagtcccac |
1965333 |
T |
|
| Q |
494 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcac |
565 |
Q |
| |
|
||| ||||| || ||| |||||| |||||| ||| ||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
1965332 |
tttaaggcccccagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcac |
1965261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 2017361 - 2017504
Alignment:
| Q |
14 |
ctaaagggcatgtgcaaatccataaagcaaaacaatatcgccagaagcttgtggtgatcatagtttaaatatctaaaacaaccaggaacaaaatcaccat |
113 |
Q |
| |
|
||||||||||||||||| || | || ||||||||||||| || ||||||||| |||||||||| ||||||||||||| |||| ||||||||| || |
|
|
| T |
2017361 |
ctaaagggcatgtgcaactcgacaatgcaaaacaatatcagcataagcttgtgatgatcatagtctaaatatctaaaa-ggccagagtcaaaatcactat |
2017459 |
T |
|
| Q |
114 |
acaggatgaataatgaacatagaaattcagatctgataaatcatg |
158 |
Q |
| |
|
||| | ||||| || | |||||||||||||| |||||||||||| |
|
|
| T |
2017460 |
acaaggtgaatgctgtatatagaaattcagatatgataaatcatg |
2017504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 295 - 568
Target Start/End: Complemental strand, 5906521 - 5906248
Alignment:
| Q |
295 |
tccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgcag |
394 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||| ||| |||||||||| | || || || |||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
5906521 |
tccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaagtgcattagtagctgcttctttcaattccttcatattattgcgcaa |
5906422 |
T |
|
| Q |
395 |
tttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccact |
494 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| || || || |||| |||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
5906421 |
tttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacc |
5906322 |
T |
|
| Q |
495 |
tttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacacc |
568 |
Q |
| |
|
|||||||| ||||||| || || |||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5906321 |
tttaggccctcactcagcacaaatgcattcattctctgctcagcaaacagaggccatgtgattagtggcacacc |
5906248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 294 - 568
Target Start/End: Complemental strand, 5903038 - 5902764
Alignment:
| Q |
294 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
393 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||| || |||||||| | || || ||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
5903038 |
ctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgcattagtagaagcttcttttaattccttcatattattgcgca |
5902939 |
T |
|
| Q |
394 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
493 |
Q |
| |
|
||| ||| |||||| ||||||||||||| ||||||||| | || |||||| ||||||| ||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
5902938 |
aattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctccctttcaacaatgccattatcattaacccttggcctcagtcccac |
5902839 |
T |
|
| Q |
494 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacacc |
568 |
Q |
| |
|
||| ||||| ||||||| || ||| |||||| |||| |||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
5902838 |
tttaaggccctcactcagcacaactgcattcattctttgctcaccaaacaaaggccatgtgattagtggcacacc |
5902764 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 5890607 - 5890659
Alignment:
| Q |
294 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttcttt |
346 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
5890607 |
ctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttcttt |
5890659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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