View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_12 (Length: 537)
Name: NF16632_high_12
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 24208825 - 24209352
Alignment:
| Q |
1 |
catatgaaaaggtttggtgtggtttgtgattctgcgtattcgtcgatgataacgatttatacgaggttagggttatatgcaaaggctgaaagtgtggttg |
100 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24208825 |
catatgaaaaggtttagtgtggtttgtgaatctgcgtattcgtcgatgataacgatttatacgaggttagggttatatgcaaaggctgaaagtgtggttg |
24208924 |
T |
|
| Q |
101 |
agttgatggagaaagaagtgatggttttgaatgttgaaaattggttggtgattttgaatttgtattgtcagcaagggaaaatggtggaagccgagagagt |
200 |
Q |
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| T |
24208925 |
agttgatggagaaagaagtgatggttttgaatgttgaaaattggttagtgattttgaatttgtattgtcagcaagggaaaatggtggaagccgagagagt |
24209024 |
T |
|
| Q |
201 |
tttggcgaaaatggaagaggaggcggggttttgtgttgagaatattgttgtttataataccatgattacggggtatggtaaggcgtcgaatatggatggt |
300 |
Q |
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| T |
24209025 |
tttggcgataatggaagaggaggcggggttttgtgttgagaatattgttgtttataataccatgattacggggtatggtaaggcgtcgaatatggatggt |
24209124 |
T |
|
| Q |
301 |
gctgagagtgtgtttttgagattaggtgggaggattgagccggatgaaactagttatcgatcgatgattgagggttggggtagagcggggaattatgaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24209125 |
gctgagagtgtgtttttgagattaggtgggaggattgagccggatgaaactagttatcggtcgatgattgagggttggggtagagcggggaattatgaga |
24209224 |
T |
|
| Q |
401 |
aggcaaggtggtattatgaggagttgaagagattaggatttaagcctagttcgtctaatttgtttacgatgattaagttgcaagcgtatgaggatgattt |
500 |
Q |
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| T |
24209225 |
aggcaaggtggtattatgaggagttgaagagattagggtttaagcctagttcgtctaatttgtttacaatgattaagttgcaagcgaatgaggatgattt |
24209324 |
T |
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| Q |
501 |
ggatggtgtggttggtacacttgatgat |
528 |
Q |
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| T |
24209325 |
ggatggtgtggttggtacacttgatgat |
24209352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 243 - 528
Target Start/End: Original strand, 16842228 - 16842513
Alignment:
| Q |
243 |
tattgttgtttataataccatgattacggggtatggtaaggcgtcgaatatggatggtgctgagagtgtgtttttgagattaggtgggaggattgagccg |
342 |
Q |
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| T |
16842228 |
tattgttgtttataatacgatgattacgggctatggtaaggcatcgaatatggatggtgctgagggtgtgtttttgactttaggtgggaggattgagccg |
16842327 |
T |
|
| Q |
343 |
gatgaaactagttatcgatcgatgattgagggttggggtagagcggggaattatgagaaggcaaggtggtattatgaggagttgaagagattaggattta |
442 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| | | |||| |
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| T |
16842328 |
gatgaaactagttatcgatcaatgattgagggttggggtagagctgggaattatgaaaaggctaggtggtattatgaggagttgaagagataacggttta |
16842427 |
T |
|
| Q |
443 |
agcctagttcgtctaatttgtttacgatgattaagttgcaagcgtatgaggatgatttggatggtgtggttggtacacttgatgat |
528 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |
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| T |
16842428 |
agcagagttcgtctaatttgtttacgatgattaagttgcaagcgagtgaggatgatttggatggtttggttggtttacttgatgat |
16842513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 16842067 - 16842233
Alignment:
| Q |
2 |
atatgaaaaggtttggtgtggtttgtgattctgcgtattcgtcgatgataacgatttatacgaggttagggttatatgcaaaggctgaaagtgtggttga |
101 |
Q |
| |
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||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
16842067 |
atatgaaaatatttggtgtggtttgtgaatctgtttattcgtcgatgatcacgatttatacgaggttaaggttatttgaaaaggctgaaagtgtggttga |
16842166 |
T |
|
| Q |
102 |
gttgatggagaaagaagtgatggttttgaatgttgaaaattggttggtgattttgaatttgtattgt |
168 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16842167 |
gttgatggagagggaagtgatggttttgaatgttgaaaattggttggtgattttgaatgtgtattgt |
16842233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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