View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_high_15 (Length: 495)
Name: NF16632_high_15
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Complemental strand, 40565304 - 40564869
Alignment:
| Q |
17 |
cataggacgtgggtgcaggtgttacaatggctccaacccatgaacaaatcacataataatatagacagattgtgcacaagtgaagtgaggaataaaactt |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40565304 |
cataggacgtgggtg---gtgttacaatggctccaacccatgaaccaatcacataataatatagacagattgtgcacaagtgaagtgaggaataaaactt |
40565208 |
T |
|
| Q |
117 |
ggattttggacaatactgaattcagagagttgattggtaaatgtagggattcttttatcgaattataataattttggagtaagtttgattcgaagacaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40565207 |
ggattttggacaatactgaattcagagagttgattggtaaatgtagggattcttttatcgaattataataattttggagtaagtttgattcgaagacaag |
40565108 |
T |
|
| Q |
217 |
ccaatcaaattgatcattcttcggcaagggcatttcggtattctgacagccaccaatttcttgattgtattctaccattattcaggaannnnnnngttcg |
316 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
40565107 |
ccaatcaaattgatcattcttccgcaagggcatttcgatattctgatagcca----------------------ccattattcaggaatttttttgttcg |
40565030 |
T |
|
| Q |
317 |
aaattatcgaggattttatcatgaatgaaatgcaatgtgttttatccttatgaaataaaaagtaggagtgacaattatatctattaattcacattatcaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40565029 |
aaattatcgaggattttatcatgaatgaaatgcaatgtgttttatccttatgaaataaaaagtaggagtgacaattacatctattaattcacattatcaa |
40564930 |
T |
|
| Q |
417 |
attcatctaatcccattcatccaataaacaagctaatcgatggagtggaacaaattcatttc |
478 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40564929 |
attcatctaat-ccattcatccaataagcaagctaatcgatggagtggaacaaattcatttc |
40564869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University