View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_19 (Length: 446)

Name: NF16632_high_19
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_19
NF16632_high_19
[»] chr5 (10 HSPs)
chr5 (16-434)||(4190141-4190559)
chr5 (349-434)||(3907630-3907711)
chr5 (348-434)||(41169472-41169556)
chr5 (367-424)||(28907360-28907415)
chr5 (367-424)||(28943755-28943810)
chr5 (350-434)||(40927688-40927770)
chr5 (348-426)||(17474863-17474939)
chr5 (349-395)||(42249384-42249430)
chr5 (354-424)||(25545199-25545265)
chr5 (348-420)||(35244916-35244986)
[»] chr6 (7 HSPs)
chr6 (351-434)||(24110039-24110120)
chr6 (354-434)||(1473594-1473672)
chr6 (350-418)||(4483343-4483407)
chr6 (350-427)||(17389986-17390061)
chr6 (398-432)||(34093896-34093930)
chr6 (348-420)||(31946914-31946984)
chr6 (344-434)||(4494365-4494451)
[»] chr3 (6 HSPs)
chr3 (348-434)||(35357290-35357374)
chr3 (348-426)||(3901583-3901658)
chr3 (350-427)||(36480682-36480757)
chr3 (360-424)||(37189236-37189298)
chr3 (350-434)||(51541220-51541302)
chr3 (398-434)||(11532517-11532553)
[»] chr8 (5 HSPs)
chr8 (347-431)||(2288684-2288766)
chr8 (347-424)||(20271105-20271180)
chr8 (347-424)||(21057733-21057808)
chr8 (354-426)||(2288578-2288648)
chr8 (349-424)||(36009914-36009987)
[»] chr2 (12 HSPs)
chr2 (354-434)||(12779481-12779558)
chr2 (348-425)||(25666889-25666964)
chr2 (344-422)||(18719702-18719776)
chr2 (360-423)||(33069152-33069213)
chr2 (348-423)||(35715066-35715139)
chr2 (354-425)||(42094293-42094362)
chr2 (375-434)||(42251245-42251302)
chr2 (350-420)||(16209471-16209539)
chr2 (348-394)||(38419202-38419248)
chr2 (350-434)||(37810121-37810203)
chr2 (398-431)||(44247623-44247656)
chr2 (375-426)||(42251163-42251212)
[»] chr7 (10 HSPs)
chr7 (353-423)||(49106998-49107066)
chr7 (354-423)||(5443622-5443689)
chr7 (354-423)||(5452667-5452734)
chr7 (350-432)||(5443505-5443585)
chr7 (350-432)||(5452550-5452630)
chr7 (352-426)||(12275828-12275900)
chr7 (373-425)||(2276275-2276325)
chr7 (348-423)||(26647783-26647856)
chr7 (398-434)||(29356938-29356974)
chr7 (363-434)||(40803225-40803294)
[»] chr4 (10 HSPs)
chr4 (348-425)||(33413976-33414051)
chr4 (347-415)||(16458020-16458086)
chr4 (350-434)||(41840568-41840650)
chr4 (363-434)||(21433861-21433930)
chr4 (360-425)||(21433964-21434027)
chr4 (374-432)||(34119639-34119695)
chr4 (350-426)||(15134542-15134616)
chr4 (351-391)||(8750717-8750757)
chr4 (362-425)||(45654102-45654163)
chr4 (362-425)||(52374904-52374965)
[»] chr1 (12 HSPs)
chr1 (367-424)||(16661807-16661862)
chr1 (350-423)||(939307-939380)
chr1 (354-425)||(49822619-49822688)
chr1 (349-427)||(7444370-7444446)
chr1 (349-426)||(34437687-34437762)
chr1 (350-434)||(40669011-40669091)
chr1 (349-420)||(7444255-7444324)
chr1 (348-394)||(731303-731349)
chr1 (398-431)||(16257546-16257579)
chr1 (371-423)||(31970116-31970166)
chr1 (349-424)||(2542677-2542749)
chr1 (375-426)||(34437598-34437647)
[»] scaffold0620 (1 HSPs)
scaffold0620 (398-432)||(9230-9264)
[»] scaffold0003 (2 HSPs)
scaffold0003 (346-390)||(109775-109819)
scaffold0003 (349-424)||(136413-136486)


Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 4190559 - 4190141
Alignment:
Q  16 atagtactatgaatctatgatatgaacttctgtnnnnnnnnnttactattatgatatgatatcgtttttacacaatacacaataaaatgacctaaataca 115  Q
    ||||| |||||||||||||||||||||||| ||         |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4190559 atagtgctatgaatctatgatatgaacttcagtaaaaaaaa-ttactattatgatatgatatagtttttacacaatacacaataaaatgacctaaataca 4190461  T
Q  116 actctgatagtaaaagtctataatacatttgatattctggtgcgtgaatttgaacccatgattttctatttctttatgcttaatgtttgttcccaactag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4190460 actctgatagtaaaagtctataatacatttgatattctggtgcgtgaatttgaacccatgattttctatttctttatgcttaatgtttgttcccatctag 4190361  T
Q  216 acttttgaaaataaaaaagacataactacatgtatattagaatcactaaaatagtattcattttataactttccaaacacatgaaaccaaa-caaaacac 314  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4190360 actcttgaaaataaaaaagacataactacatgtatattagaatcactaaaatagtattcattttataactttccaaacacatgaaaccaaaccaaaacac 4190261  T
Q  315 aagagaacatactagattccttggataattttaaagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaa 414  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  4190260 aagagaacatacaagattccttggataattttaaagagaaatgctagcaacatacattctaacacacacttttcaacacacggtctctttgataggttaa 4190161  T
Q  415 aattcacatgggatccacca 434  Q
    ||||||||||||| ||||||    
T  4190160 aattcacatgggacccacca 4190141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 434
Target Start/End: Original strand, 3907630 - 3907711
Alignment:
Q  349 agagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    |||||||||| ||||||| ||||||||||| ||| |||||||||||    ||||||||| ||||||||||||||||||| ||||||    
T  3907630 agagaaatgctagcaacacacattctaacaaacacttttcaacaca----ctctttgattggttaaaattcacatgggacccacca 3907711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 41169556 - 41169472
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||||||||| || |||| | ||| ||||| ||||||||||||||||  ||||||||||| ||||||||||||||| |||||||||    
T  41169556 aagagaaatgctagtaacacatattttaacacacatttttcaacacac--tctctttgatccgttaaaattcacatgtgatccacca 41169472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 28907360 - 28907415
Alignment:
Q  367 tacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||||||||||    
T  28907360 tacattctaacacacatttttcaacacat--tctctttgatcggttaaaattcacatg 28907415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 28943755 - 28943810
Alignment:
Q  367 tacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||||||||||    
T  28943755 tacattctaacacacatttttcaacacat--tctctttgatcggttaaaattcacatg 28943810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 40927770 - 40927688
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||||||| ||||||| ||||| ||||| | ||||||||||| ||  | |||||||| ||| ||||||||||||||| ||||||    
T  40927770 gagaaatgctagcaacacacattataacacaaatttttcaacaaac--tatctttgattggtcaaaattcacatgggacccacca 40927688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 17474939 - 17474863
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggg 426  Q
    ||||| ||||| | ||||||||||| ||||| ||| ||||||||||||   ||||||||| | ||||||||||||||||    
T  17474939 aagaggaatgctaacaacatacattttaacacacacttttcaacacac--actctttgattgattaaaattcacatggg 17474863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 395
Target Start/End: Original strand, 42249384 - 42249430
Alignment:
Q  349 agagaaatgccagcaacatacattctaacatacatttttcaacacac 395  Q
    |||||||||| ||||||||| ||||||||| | ||||||||||||||    
T  42249384 agagaaatgctagcaacataaattctaacacatatttttcaacacac 42249430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 25545199 - 25545265
Alignment:
Q  354 aatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    ||||| ||||| | ||||| ||||| |||||||||||||||    ||||||||| ||||||||||||||||    
T  25545199 aatgctagcaatacacattttaacacacatttttcaacaca----ctctttgattggttaaaattcacatg 25545265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 35244986 - 35244916
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattca 420  Q
    ||||||||||| ||||||| ||||| ||||||||| || |||||||||  | |||||||| |||| |||||||    
T  35244986 aagagaaatgctagcaacacacattttaacatacacttgtcaacacac--tttctttgattggttgaaattca 35244916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 434
Target Start/End: Original strand, 24110039 - 24110120
Alignment:
Q  351 agaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    |||||||| ||||||| | ||||||| ||||||||||||||||||  |||||||||| |||||||||||| ||| |||||||||    
T  24110039 agaaatgctagcaacacatattctaaaatacatttttcaacacac--tctctttgattggttaaaattcatatgtgatccacca 24110120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 1473594 - 1473672
Alignment:
Q  354 aatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||| ||||||| ||||| ||| | ||||||||||||||||  | |||||||| |||||||||||||||||| |||||||    
T  1473594 aatgctagcaacacacattttaatacacatttttcaacacac--tatctttgattggttaaaattcacatgggttccacca 1473672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 4483343 - 4483407
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaatt 418  Q
    ||||||| | ||||||||||||| ||||||||| ||||||||||    |||||||||| ||||||||||    
T  4483343 gagaaatactagcaacatacattttaacatacacttttcaacac----tctctttgattggttaaaatt 4483407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 17390061 - 17389986
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggga 427  Q
    ||||||||| ||||||| ||||| |||||  || |||||||||| |  |||||||||| |||||||||||||| ||||    
T  17390061 gagaaatgctagcaacacacattttaacacgcaattttcaacactc--tctctttgattggttaaaattcacacggga 17389986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 432
Target Start/End: Complemental strand, 34093930 - 34093896
Alignment:
Q  398 tctctttgatcggttaaaattcacatgggatccac 432  Q
    |||||||||| ||||||||||||||||||||||||    
T  34093930 tctctttgattggttaaaattcacatgggatccac 34093896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 31946984 - 31946914
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattca 420  Q
    ||||| ||||| ||||||| ||||||||||| ||| ||||||||||||   || ||| |||||||||||||||    
T  31946984 aagaggaatgctagcaacacacattctaacacacacttttcaacacac--acttttttatcggttaaaattca 31946914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 434
Target Start/End: Original strand, 4494365 - 4494451
Alignment:
Q  344 tttaaagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    |||| |||| ||||| |||| || |||||||||||  |||||||||||||||  | |||||||| ||||||||||||| |  |||||||||    
T  4494365 tttatagaggaatgctagcagcacacattctaaca--catttttcaacacac--tttctttgattggttaaaattcacgtctgatccacca 4494451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 35357290 - 35357374
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||||||||| ||||||| ||||||||||| | ||||||||||||||  |||||||||| |||||||| ||||||| || ||||||    
T  35357290 aagagaaatgctagcaacacacattctaacaaatatttttcaacacac--tctctttgattggttaaaactcacatgtgaaccacca 35357374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 3901658 - 3901583
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggg 426  Q
    ||||| ||||| | ||||||||||| ||||| ||| ||||||||||||  |||||||||| ||||||||||||||||||    
T  3901658 aagaggaatgctaacaacatacatt-taacacacacttttcaacacac--tctctttgattggttaaaattcacatggg 3901583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 36480682 - 36480757
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggga 427  Q
    ||||||||| | ||||| ||||| ||||| ||  ||| ||||||||  |||||||||| |||||||||||||||||||    
T  36480682 gagaaatgctaacaacacacattttaacacaccctttccaacacac--tctctttgattggttaaaattcacatggga 36480757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 37189298 - 37189236
Alignment:
Q  360 agcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    ||||||| ||||| ||| |||||||||| |||| ||  |||||||||| ||||||||||||||||    
T  37189298 agcaacacacattttaatatacattttttaacagac--tctctttgattggttaaaattcacatg 37189236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 51541220 - 51541302
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||||||| ||||||| || |||||| ||||||||||||| ||||  | | |||||| |||||||| ||||||| || ||||||    
T  51541220 gagaaatgctagcaacaaaccttctaatatacatttttcaatacac--tatttttgattggttaaaactcacatgtgacccacca 51541302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 434
Target Start/End: Complemental strand, 11532553 - 11532517
Alignment:
Q  398 tctctttgatcggttaaaattcacatgggatccacca 434  Q
    |||||||||| |||||||||||||||||| |||||||    
T  11532553 tctctttgattggttaaaattcacatgggttccacca 11532517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 2288766 - 2288684
Alignment:
Q  347 aaagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatcca 431  Q
    |||||||||||| ||||||| ||||||||| | ||| |||||||||  |  |||||||||| |||||||||||||||||||||||    
T  2288766 aaagagaaatgctagcaacacacattctaaaagacacttttcaacaatc--tctctttgattggttaaaattcacatgggatcca 2288684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 20271180 - 20271105
Alignment:
Q  347 aaagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    |||||||||||  ||||||| ||||| |||||  || ||||||||||||  ||||||||||  |||||||||||||||    
T  20271180 aaagagaaatgttagcaacacacattttaacacgcacttttcaacacac--tctctttgattagttaaaattcacatg 20271105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 21057808 - 21057733
Alignment:
Q  347 aaagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    |||||||||||  ||||||| ||||| |||||  || ||||||||||||  ||||||||||  |||||||||||||||    
T  21057808 aaagagaaatgttagcaacacacattttaacacgcacttttcaacacac--tctctttgattagttaaaattcacatg 21057733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 2288578 - 2288648
Alignment:
Q  354 aatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggg 426  Q
    ||||||||||||| | ||||||||| ||| |||  |||||||  |||||||||| |||||||||| |||||||    
T  2288578 aatgccagcaacacatattctaacacacactttcgaacacac--tctctttgattggttaaaatttacatggg 2288648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 36009987 - 36009914
Alignment:
Q  349 agagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    |||| ||||| ||||||| ||||| ||||| ||| ||| ||||||||  |||||||| | ||||||||||||||||    
T  36009987 agaggaatgctagcaacaaacattttaacacacactttccaacacac--tctctttggttggttaaaattcacatg 36009914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 12779481 - 12779558
Alignment:
Q  354 aatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||| ||||||| || ||||||||||||||||||||||||   ||| |||||| ||||||||||||||||||||||||||    
T  12779481 aatgctagcaacacaccttctaacatacatttttcaacacat--tct-tttgattggttaaaattcacatgggatccacca 12779558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 25666964 - 25666889
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgg 425  Q
    ||||||||||| ||||||| ||||| ||||||||| ||||||||||||  ||||||||||  |||||||| |||||||    
T  25666964 aagagaaatgctagcaacacacattttaacatacaattttcaacacac--tctctttgatgtgttaaaatccacatgg 25666889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 18719702 - 18719776
Alignment:
Q  344 tttaaagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcaca 422  Q
    |||| |||| ||||| ||||||| ||||||||||  ||||||||||||||||  ||| |||||| ||||||||||||||    
T  18719702 tttatagaggaatgctagcaacacacattctaac--acatttttcaacacac--tctttttgattggttaaaattcaca 18719776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 33069152 - 33069213
Alignment:
Q  360 agcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacat 423  Q
    ||||||| |||||||| || ||| ||||||||||||  | ||||||||||||||||||||||||    
T  33069152 agcaacacacattctatcacacacttttcaacacac--tttctttgatcggttaaaattcacat 33069213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 35715139 - 35715066
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacat 423  Q
    ||||||||||||||||||| ||||| ||| | ||| ||||||| ||||  |||||||||| |||||||||| ||||    
T  35715139 aagagaaatgccagcaacacacattttaagacacacttttcaatacac--tctctttgattggttaaaatttacat 35715066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 42094362 - 42094293
Alignment:
Q  354 aatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgg 425  Q
    ||||| ||||||| ||||| ||||| ||| ||||||||||||   ||||||||| |||||||||||||||||    
T  42094362 aatgctagcaacacacattttaacacacacttttcaacacaca--ctctttgattggttaaaattcacatgg 42094293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 434
Target Start/End: Complemental strand, 42251302 - 42251245
Alignment:
Q  375 aacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    |||| ||| ||||||||||||  |||||||||| | ||||||||||||||||||||||||    
T  42251302 aacacacacttttcaacacac--tctctttgattgattaaaattcacatgggatccacca 42251245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 420
Target Start/End: Complemental strand, 16209539 - 16209471
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattca 420  Q
    ||||||||| ||||||| | ||||||||||||| |||||||| ||   ||||||||||| |||||||||||    
T  16209539 gagaaatgctagcaacacatattctaacatacacttttcaacgca--ttctctttgatcagttaaaattca 16209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 38419202 - 38419248
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacaca 394  Q
    ||||||||||||||||||| |||||  | ||||||||||||||||||    
T  38419202 aagagaaatgccagcaacaaacatttcaccatacatttttcaacaca 38419248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 37810121 - 37810203
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||||||  ||||| ||||||| ||||  | | ||||||||||||  |||||||||| ||||| ||||||||||||| ||||||    
T  37810121 gagaaatggtagcaaaatacattttaactcatacttttcaacacac--tctctttgattggttataattcacatgggacccacca 37810203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 44247656 - 44247623
Alignment:
Q  398 tctctttgatcggttaaaattcacatgggatcca 431  Q
    |||||||||| |||||||||||||||||||||||    
T  44247656 tctctttgattggttaaaattcacatgggatcca 44247623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 42251163 - 42251212
Alignment:
Q  375 aacatacatttttcaacacacggtctctttgatcggttaaaattcacatggg 426  Q
    |||| ||||||||| ||||||  |||||||||||||||||||||| ||||||    
T  42251163 aacacacatttttcgacacac--tctctttgatcggttaaaattcgcatggg 42251212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 49107066 - 49106998
Alignment:
Q  353 aaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacat 423  Q
    |||||| | ||||||||||||||||| ||| ||||||||||||  |||||||||| |||||||||||||||    
T  49107066 aaatgctaccaacatacattctaacacacacttttcaacacac--tctctttgattggttaaaattcacat 49106998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 5443689 - 5443622
Alignment:
Q  354 aatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacat 423  Q
    ||||| ||||||| ||||||||||| ||||||||||||| ||  | |||||||| |||||||||||||||    
T  5443689 aatgctagcaacacacattctaacacacatttttcaacatac--tttctttgattggttaaaattcacat 5443622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 5452734 - 5452667
Alignment:
Q  354 aatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacat 423  Q
    ||||| ||||||| ||||||||||| ||||||||||||| ||  | |||||||| |||||||||||||||    
T  5452734 aatgctagcaacacacattctaacacacatttttcaacatac--tttctttgattggttaaaattcacat 5452667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 432
Target Start/End: Original strand, 5443505 - 5443585
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccac 432  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||   ||| ||||| |||||| ||||||||| ||| ||||    
T  5443505 gagaaatgttagcaacatacattctaacacacacttttcaacaca--ttctgtttgaccggttagaattcacataggacccac 5443585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 432
Target Start/End: Original strand, 5452550 - 5452630
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccac 432  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||   ||| ||||| |||||| ||||||||| ||| ||||    
T  5452550 gagaaatgttagcaacatacattctaacacacacttttcaacaca--ttctgtttgaccggttagaattcacataggacccac 5452630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 12275900 - 12275828
Alignment:
Q  352 gaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggg 426  Q
    ||||||| ||||||| ||||||||||| ||| ||| ||||||||  |||||| ||| |||||||||||| |||||    
T  12275900 gaaatgctagcaacacacattctaacacacactttccaacacac--tctcttcgattggttaaaattcatatggg 12275828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 2276275 - 2276325
Alignment:
Q  373 ctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgg 425  Q
    |||||| ||| ||||||||||||  |||||||||| |||||||||||||||||    
T  2276275 ctaacacacacttttcaacacac--tctctttgattggttaaaattcacatgg 2276325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 26647856 - 26647783
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacat 423  Q
    ||||| ||||| ||||||||||||||||| | ||| ||||||||||||  | | |||||| ||||| |||||||||    
T  26647856 aagaggaatgctagcaacatacattctaatacacacttttcaacacac--tatttttgattggttagaattcacat 26647783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 434
Target Start/End: Original strand, 29356938 - 29356974
Alignment:
Q  398 tctctttgatcggttaaaattcacatgggatccacca 434  Q
    |||||||||| |||||||||||||||||| |||||||    
T  29356938 tctctttgattggttaaaattcacatgggttccacca 29356974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 40803294 - 40803225
Alignment:
Q  363 aacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    |||| ||||||||||||||| |||| || ||||  | | ||| || ||||||||||||||||||||||||||    
T  40803294 aacacacattctaacatacactttttaaaacac--tattttttattggttaaaattcacatgggatccacca 40803225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 33413976 - 33414051
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgg 425  Q
    ||||||||||||| ||| | ||||| ||||| ||| ||||||||||||  |||||||||| |||||||||||||||||    
T  33413976 aagagaaatgccaacaaaacacattgtaacacacacttttcaacacac--tctctttgattggttaaaattcacatgg 33414051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 16458086 - 16458020
Alignment:
Q  347 aaagagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaa 415  Q
    |||||||||||| ||||||| ||||||||||| ||| ||||||||||||  |||||||||||| |||||    
T  16458086 aaagagaaatgctagcaacacacattctaacacacacttttcaacacac--tctctttgatcgattaaa 16458020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 41840568 - 41840650
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||||||  ||||||||||||| ||||| | ||||||||||||||  |||||||||| | |||||||| ||||||| |||||||    
T  41840568 gagaaatgttagcaacatacattttaacacatatttttcaacacac--tctctttgattgattaaaatttacatgggttccacca 41840650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 21433861 - 21433930
Alignment:
Q  363 aacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    |||| ||||| ||||| ||||||||||||||||  |||||||||| |||||||||||||||| || ||||||    
T  21433861 aacacacattttaacacacatttttcaacacac--tctctttgattggttaaaattcacatgagacccacca 21433930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 21434027 - 21433964
Alignment:
Q  360 agcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgg 425  Q
    ||||||| ||||| ||||||||| ||||||||||||  |||| ||||| |||||||||||||||||    
T  21434027 agcaacacacattttaacatacacttttcaacacac--tctcattgattggttaaaattcacatgg 21433964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 34119639 - 34119695
Alignment:
Q  374 taacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccac 432  Q
    ||||| ||||||||||||||||  ||  ||||||||||||||||||||||| |||||||    
T  34119639 taacacacatttttcaacacac--tcgttttgatcggttaaaattcacatgagatccac 34119695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 15134542 - 15134616
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggg 426  Q
    ||||||||| || |||| | ||| ||||| |||||||||||||||   ||||||| || ||||||||||||||||||    
T  15134542 gagaaatgctagtaacacaaattttaacacacatttttcaacaca--ttctcttttattggttaaaattcacatggg 15134616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 8750757 - 8750717
Alignment:
Q  351 agaaatgccagcaacatacattctaacatacatttttcaac 391  Q
    |||||||| |||||||| ||||||| |||||||||||||||    
T  8750757 agaaatgctagcaacatgcattctatcatacatttttcaac 8750717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 45654163 - 45654102
Alignment:
Q  362 caacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgg 425  Q
    ||||||||||||||||| | |||||| |||||||  | | |||||| |||||||||||||||||    
T  45654163 caacatacattctaacacatattttttaacacac--tttttttgattggttaaaattcacatgg 45654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 52374904 - 52374965
Alignment:
Q  362 caacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgg 425  Q
    ||||| ||||| ||||| ||| ||||||||||||  |||||||||| | |||||||||||||||    
T  52374904 caacacacattttaacacacacttttcaacacac--tctctttgatagattaaaattcacatgg 52374965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 16661807 - 16661862
Alignment:
Q  367 tacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||||||||||    
T  16661807 tacattctaacacacatttttcaacacat--tctctttgatcggttaaaattcacatg 16661862  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 939307 - 939380
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacat 423  Q
    ||||||||| | ||||||||||||||| | |||| ||||||||||   |||||||||| |||||||||||||||    
T  939307 gagaaatgctaacaacatacattctaatacacatatttcaacacatattctctttgattggttaaaattcacat 939380  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 49822688 - 49822619
Alignment:
Q  354 aatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgg 425  Q
    ||||| ||||||| | ||| ||||| ||||||||||||||||  |||||||||| |||||||||||||||||    
T  49822688 aatgctagcaacacatattataacacacatttttcaacacac--tctctttgattggttaaaattcacatgg 49822619  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 7444446 - 7444370
Alignment:
Q  349 agagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggga 427  Q
    |||||||||  ||||||| ||||||||||| ||| |||||||||||   ||||||||||  ||||||||||||||||||    
T  7444446 agagaaatgttagcaacacacattctaacaaacacttttcaacaca--ttctctttgatgagttaaaattcacatggga 7444370  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 34437762 - 34437687
Alignment:
Q  349 agagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatggg 426  Q
    ||||||| || ||||||| ||||| |||||  || ||||||||||||  |||||||||| ||||||||||||||||||    
T  34437762 agagaaacgctagcaacacacattttaacacgcacttttcaacacac--tctctttgattggttaaaattcacatggg 34437687  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 40669091 - 40669011
Alignment:
Q  350 gagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatgggatccacca 434  Q
    ||||||||| ||||||| ||||| ||||| ||  ||||||||||||  |||||||||| |||||||||||||| ||| |||||||    
T  40669091 gagaaatgctagcaacacacattttaacacac--ttttcaacacac--tctctttgattggttaaaattcacacgggttccacca 40669011  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 420
Target Start/End: Original strand, 7444255 - 7444324
Alignment:
Q  349 agagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattca 420  Q
    |||||||||| ||||||| ||||| ||||| |||||||||||||||   | ||||| |||||||||||||||    
T  7444255 agagaaatgctagcaacacacattttaacacacatttttcaacaca--ttttctttaatcggttaaaattca 7444324  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 731303 - 731349
Alignment:
Q  348 aagagaaatgccagcaacatacattctaacatacatttttcaacaca 394  Q
    ||||||||||| ||||| ||||||||||||| | |||||||||||||    
T  731303 aagagaaatgctagcaatatacattctaacacatatttttcaacaca 731349  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 16257546 - 16257579
Alignment:
Q  398 tctctttgatcggttaaaattcacatgggatcca 431  Q
    |||||||||| |||||||||||||||||||||||    
T  16257546 tctctttgattggttaaaattcacatgggatcca 16257579  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 31970116 - 31970166
Alignment:
Q  371 ttctaacatacatttttcaacacacggtctctttgatcggttaaaattcacat 423  Q
    |||||||| ||||||||||||||||  ||| |||||| |||||||||||||||    
T  31970116 ttctaacacacatttttcaacacac--tctttttgattggttaaaattcacat 31970166  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 2542677 - 2542749
Alignment:
Q  349 agagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    ||||||||| || ||| ||| ||| ||||| ||||||||||||||||  |||||||||| |||||||||| |||||    
T  2542677 agagaaatgtcaacaa-atatattttaacacacatttttcaacacac--tctctttgattggttaaaatttacatg 2542749  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 34437598 - 34437647
Alignment:
Q  375 aacatacatttttcaacacacggtctctttgatcggttaaaattcacatggg 426  Q
    |||| ||||||||||||| ||  |||||||||| ||||||||||||||||||    
T  34437598 aacacacatttttcaacaaac--tctctttgattggttaaaattcacatggg 34437647  T

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Target: scaffold0620 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 432
Target Start/End: Complemental strand, 9264 - 9230
Alignment:
Q  398 tctctttgatcggttaaaattcacatgggatccac 432  Q
    |||||||||| ||||||||||||||||||||||||    
T  9264 tctctttgattggttaaaattcacatgggatccac 9230  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 109775 - 109819
Alignment:
Q  346 taaagagaaatgccagcaacatacattctaacatacatttttcaa 390  Q
    ||||||||||||||||||||| ||||| ||| || ||||||||||    
T  109775 taaagagaaatgccagcaacacacattttaaaatgcatttttcaa 109819  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 136486 - 136413
Alignment:
Q  349 agagaaatgccagcaacatacattctaacatacatttttcaacacacggtctctttgatcggttaaaattcacatg 424  Q
    |||| ||||| ||||| | ||||| ||||| ||||||||||||||||  ||| |||||| |||||||| |||||||    
T  136486 agaggaatgctagcaatacacattttaacacacatttttcaacacac--tctttttgattggttaaaactcacatg 136413  T

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