View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_high_2 (Length: 770)
Name: NF16632_high_2
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 230 - 763
Target Start/End: Complemental strand, 13872667 - 13872132
Alignment:
| Q |
230 |
aacataatgaaattttatggaacatgtttgt--ctcccaaaatatctattatgtttaattgtagttcataaaccagtgtccatctctttccatgtttata |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872667 |
aacataatgaaattttatggaacatgtttgtgtctcccaaaatatctattatgtttaattgtagttcataaaccagtgtccatctctttccatgtttata |
13872568 |
T |
|
| Q |
328 |
tatgtagccactttctcttagattaagctgttaagcaaccacttcatgtaagccattcactaatcagttgatcgttattggcatttagctgcaatatatt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872567 |
tatgtagccactttctcttagattaagctgttaagcaaccacttcatgtaagccattcactaatcagttgatcgttattggcatttagctgcaatatatt |
13872468 |
T |
|
| Q |
428 |
ggtctttgcactttgcagattacttgcttgcagcacacaattgtcaattacacagaattgtgtattttgaaaaactaactagtaatgacactaaattcat |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872467 |
ggtctttgcactttgcagattacttgcttgcggcacacaattgtcaattacacagaattgtgtattttgaaaaactaactagtaatgacactaaattcat |
13872368 |
T |
|
| Q |
528 |
gattaactgatgttcaatttttcactgcatcaaatgacaggagtcctgtaaagattatctatgactaagggtgagtcgaggcttctacggcctagaaagc |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872367 |
gattaactgatgttcaatttttcactgcatcaaatgacaggtgtcctgtaaagattatctatgactaagggtgagtcgaggcttctacggcctagaaagc |
13872268 |
T |
|
| Q |
628 |
ttcctgcaaagattgatcgcaggcgtcacaagatataggcttcgccacaaatagtccaagataccacaccacttatccaggctataacacaactgattca |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13872267 |
ttcctgcaaagattgatcgcaggcgtcacaagatataggcttcgccacaaatagtccaaggtaccacaccacttatccaggctataccacaactgattca |
13872168 |
T |
|
| Q |
728 |
gactttacccatgaggtcttcccattcattcctatg |
763 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13872167 |
gactttacccatgaggtcttcccgttcattcctatg |
13872132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 230 - 763
Target Start/End: Complemental strand, 14012792 - 14012257
Alignment:
| Q |
230 |
aacataatgaaattttatggaacatgtttgt--ctcccaaaatatctattatgtttaattgtagttcataaaccagtgtccatctctttccatgtttata |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14012792 |
aacataatgaaattttatggaacatgtttgtgtctcccaaaatatctattatgtttaattgtagttcataaaccagtgtccatctctttccatgtttata |
14012693 |
T |
|
| Q |
328 |
tatgtagccactttctcttagattaagctgttaagcaaccacttcatgtaagccattcactaatcagttgatcgttattggcatttagctgcaatatatt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14012692 |
tatgtagccactttctcttagattaagctgttaagcaaccacttcatgtaagccattcactaatcagttgatcgttattggcatttagctgcaatatatt |
14012593 |
T |
|
| Q |
428 |
ggtctttgcactttgcagattacttgcttgcagcacacaattgtcaattacacagaattgtgtattttgaaaaactaactagtaatgacactaaattcat |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14012592 |
ggtctttgcactttgcagattacttgcttgcggcacacaattgtcaattacacagaattgtgtattttgaaaaactaactagtaatgacactaaattcat |
14012493 |
T |
|
| Q |
528 |
gattaactgatgttcaatttttcactgcatcaaatgacaggagtcctgtaaagattatctatgactaagggtgagtcgaggcttctacggcctagaaagc |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14012492 |
gattaactgatgttcaatttttcactgcatcaaatgacaggtgtcctgtaaagattatctatgactaagggtgagtcgaggcttctacggcctagaaagc |
14012393 |
T |
|
| Q |
628 |
ttcctgcaaagattgatcgcaggcgtcacaagatataggcttcgccacaaatagtccaagataccacaccacttatccaggctataacacaactgattca |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14012392 |
ttcctgcaaagattgatcgcaggcgtcacaagatataggcttcgccacaaatagtccaaggtaccacaccacttatccaggctataccacaactgattca |
14012293 |
T |
|
| Q |
728 |
gactttacccatgaggtcttcccattcattcctatg |
763 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14012292 |
gactttacccatgaggtcttcccgttcattcctatg |
14012257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 13872915 - 13872719
Alignment:
| Q |
1 |
cacaacttaacgaatcaatattatatattgattgggagtgatactcatatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
13872915 |
cacaacttaacgaatcaatattatatattgattggaagtgatactcatatttaatgtctgagattcctcaaataaaattatacatatagtgttattaatt |
13872816 |
T |
|
| Q |
101 |
tttacatttctttgtgaacacacttaaaatgcctgaatttaaaatttgttgcaggcctacaaatacattggtttggccctgtcattggacattgttc |
197 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13872815 |
tttacgtttctttgtgaacacacttaaaatgcctgaatttaaaatttgtttcaggcctacaaatccattggtttggccctgtcattggacattgttc |
13872719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14013040 - 14012844
Alignment:
| Q |
1 |
cacaacttaacgaatcaatattatatattgattgggagtgatactcatatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
14013040 |
cacaacttaacgaatcaatattatatattgattggaagtgatactcatatttaatgtctgagattcctcaaataaaattatacatatagtgttattaatt |
14012941 |
T |
|
| Q |
101 |
tttacatttctttgtgaacacacttaaaatgcctgaatttaaaatttgttgcaggcctacaaatacattggtttggccctgtcattggacattgttc |
197 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14012940 |
tttacgtttctttgtgaacacacttaaaatgcctgaatttaaaatttgtttcaggcctacaaatccattggtttggccctgtcattggacattgttc |
14012844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28646569 - 28646696
Alignment:
| Q |
1 |
cacaacttaacgaatcaatattat-atattgattgggagtgatactcatatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaat |
99 |
Q |
| |
|
|||||||||| |||| |||||| ||||||| || |||||||| ||||||||||||||||||| ||||||| ||||||| | || |||||| ||| | |
|
|
| T |
28646569 |
cacaacttaatgaattaatatttgcatattgaatgtgagtgatattcatatttaatgtctgacacgcctcaaacaaaattacatatttagtgtccttagt |
28646668 |
T |
|
| Q |
100 |
ttttacatttctttgtgaacacacttaa |
127 |
Q |
| |
|
||||| ||||||||| ||||||||||| |
|
|
| T |
28646669 |
ttttatgtttctttgtcaacacacttaa |
28646696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 569
Target Start/End: Complemental strand, 14007332 - 14007278
Alignment:
| Q |
515 |
acactaaattcatgattaactgatgttcaatttttcactgcatcaaatgacagga |
569 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
14007332 |
acactaaatttatgagtaactgatgttcaattatgcactgcagaaaatgacagga |
14007278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 31169370 - 31169486
Alignment:
| Q |
28 |
ttgattgggagtgatactcatatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaatttttacatttctttgtgaacacacttaa |
127 |
Q |
| |
|
|||||||||| | ||| ||||||||| |||| |||| ||||||||||||||| |||| ||||||| |||||||||| ||| | ||| ||||||||||| |
|
|
| T |
31169370 |
ttgattgggaataatattcatatttagtgtc--acatgcctcaaataaaattatacatttagtgttcttaatttttaagtttttatgtcaacacacttaa |
31169467 |
T |
|
| Q |
128 |
aatgcctgaatttaaaatt |
146 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
31169468 |
aatgcctcaatttaaaatt |
31169486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 32318232 - 32318315
Alignment:
| Q |
46 |
catatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaatttttacatttctttgtgaacacacttaaaa |
129 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||||||||| ||||||| |||||||||| ||||| | | ||||||||||||| |
|
|
| T |
32318232 |
catattttttgtctaacatacctcaaataaaattaaacatttagtgttcttaatttttatgtttctctataaacacacttaaaa |
32318315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 9824758 - 9824623
Alignment:
| Q |
35 |
ggagtgatactcatatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaatttttacatttctttgtgaacacactt-aaaatgcc |
133 |
Q |
| |
|
|||||||||| ||||||| ||| |||||| ||||||||| ||||| | || || |||||||||||||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
9824758 |
ggagtgatacctatatttagtgtttgacatacctcaaatataattacagatttatagtttttaatttttatgtttctctgtcaacacacttaaaaatgcc |
9824659 |
T |
|
| Q |
134 |
tgaatttaaaatttgttgcaggcctacaaatacatt |
169 |
Q |
| |
|
| ||||||||||| ||| | |||||||||| |||| |
|
|
| T |
9824658 |
tcaatttaaaattcgttttatgcctacaaatgcatt |
9824623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 33367133 - 33367058
Alignment:
| Q |
71 |
aataaaattaaacatctagtgtttttaatttttacatttctttgtgaacacacttaaaatgcctgaatttaaaatt |
146 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||| |||||| | | ||||||||||||||| || ||||||||||| |
|
|
| T |
33367133 |
aataaaattacacatttagtgttattaatttttatatttctatatcaacacacttaaaatgtctcaatttaaaatt |
33367058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 27290240 - 27290285
Alignment:
| Q |
35 |
ggagtgatactcatatttaatgtctgacattcctcaaataaaatta |
80 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
27290240 |
ggagtgatacttatatttagtgtctgacatgcctcaaataaaatta |
27290285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 16843861 - 16843940
Alignment:
| Q |
25 |
atattgattgggagtgatactcatatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaattttta |
104 |
Q |
| |
|
|||||||| | ||| |||| ||||||||||||| || || ||||||||||||||| |||| || |||| |||||||||| |
|
|
| T |
16843861 |
atattgatcgagagcgatatccatatttaatgtccgatatgcctcaaataaaattacacatttaatgttcttaattttta |
16843940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 52878883 - 52878776
Alignment:
| Q |
25 |
atattgattgggagtgatactcatatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaatttttacatttctttgtgaacacact |
124 |
Q |
| |
|
|||||||||| |||||||| | ||||||| |||||||||| |||||||||| |||| || || |||| |||||||||| ||| || ||| || ||||| |
|
|
| T |
52878883 |
atattgattgagagtgatatttatatttagtgtctgacatgcctcaaataatattattgatttattgttcttaatttttatattactatgtcaatacact |
52878784 |
T |
|
| Q |
125 |
taaaatgc |
132 |
Q |
| |
|
|||||||| |
|
|
| T |
52878783 |
taaaatgc |
52878776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 49723522 - 49723648
Alignment:
| Q |
39 |
tgatactcatatttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaatttttacatttctttgtgaacacacttaaaatgcctgaat |
138 |
Q |
| |
|
||||| ||||||||| ||| |||||| |||| ||||||||| | || || |||| ||||||||| |||||||| | | |||| ||||||| ||| ||| |
|
|
| T |
49723522 |
tgatattcatatttagtgtatgacatgtctcacataaaattacatatttaatgttcttaatttttgtatttctttatcagcacatttaaaatacctcaat |
49723621 |
T |
|
| Q |
139 |
ttaaaatttgttgcaggcctacaaata |
165 |
Q |
| |
|
|||||||| ||| || |||||||||| |
|
|
| T |
49723622 |
ttaaaattcgttttagacctacaaata |
49723648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 23808803 - 23808923
Alignment:
| Q |
50 |
tttaatgtctgacattcctcaaataaaattaaacatctagtgtttttaattttta---catttctttgtgaacacacttaaaatgcctgaatttaaaatt |
146 |
Q |
| |
|
|||| |||||| ||| ||||||| |||||| | || |||||||||||||||||| |||||| | ||||||||||||||| | | ||||||||||| |
|
|
| T |
23808803 |
tttagtgtctggcatgcctcaaagaaaattttatatttagtgtttttaatttttatagtatttctatatgaacacacttaaaagacatcaatttaaaatt |
23808902 |
T |
|
| Q |
147 |
tgttgcaggcctacaaataca |
167 |
Q |
| |
|
|||| | |||||| |||||| |
|
|
| T |
23808903 |
tgttttaagcctaccaataca |
23808923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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