View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_28 (Length: 421)
Name: NF16632_high_28
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 19207316 - 19206920
Alignment:
| Q |
1 |
gtagtaggtgatataaaagagtaaatgttagaaaagtgagtagtagtaataagaaaagagaagaaatagaaggagggaaaaagagcattacagtgtttcc |
100 |
Q |
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| T |
19207316 |
gtagtatgtgatataaaagaataaatgttagaaaagtgagtattg------agaagagaaaagaaatagagggagagaaaaagagcattacagtgtttcc |
19207223 |
T |
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| Q |
101 |
aagaccaatggagtagttggaaagagctgaagcaaatcgacaacaacgttggtaagtttgatgccaagtgtagtgacatgatccatgaatgagtgatttt |
200 |
Q |
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| T |
19207222 |
aagaccaatggagtagttggaaagagctgaagcaaatcgacaacaacgttggtaagtttgatgccaagtgtagtgacatgatccatgaatgagtgatttt |
19207123 |
T |
|
| Q |
201 |
ctgttaggatgaaccttagctgctctttctaaaaaccataacggtgttaaggctgtgtagtttgctgtgttctttggcagttcatctatgtcttttttca |
300 |
Q |
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| T |
19207122 |
ctgttaggatgaaccttagctgctctttctaaaaaccataacggtgttaaggctgtgtagtttgctgtgttctttggcagttcatctatgtcttttttca |
19207023 |
T |
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| Q |
301 |
tcaccattgctaccctaacactaacactcttgtgctatcttttgcttgtggtagaaaacaaaacaactttgtctttcttatgagaagttttgaaggtata |
400 |
Q |
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| T |
19207022 |
tcaccattgctaccctaacactaacactcttgtgctatcttttgtttgtggtagaaaacaaaacaactttgtctttcttatgagaagttttgaaggtata |
19206923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 88 - 299
Target Start/End: Original strand, 50257982 - 50258193
Alignment:
| Q |
88 |
ttacagtgtttccaagaccaatggagtagttggaaagagctgaagcaaatcgacaacaacgttggtaagtttgatgccaagtgtagtgacatgatccatg |
187 |
Q |
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| T |
50257982 |
ttacggtgtttccgagagcaatggaacggttggaaagagcggaggcgaatcgacggcagcgttgataagtctgacgccatgtgtagtgacgggatccatg |
50258081 |
T |
|
| Q |
188 |
aatgagtgattttctgttaggatgaaccttagctgctctttctaaaaaccataacggtgttaaggctgtgtagtttgctgtgttctttggcagttcatct |
287 |
Q |
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| T |
50258082 |
gatgatggattttctagttggatgaacctgagctgctctttctaagaaccataaaggtgttaaggatgtgtagtttgccgcgttctttggaaggtcgtct |
50258181 |
T |
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| Q |
288 |
atgtcttttttc |
299 |
Q |
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||||||| |||| |
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| T |
50258182 |
atgtcttgtttc |
50258193 |
T |
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