View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_29 (Length: 407)

Name: NF16632_high_29
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_29
NF16632_high_29
[»] chr1 (3 HSPs)
chr1 (195-285)||(5893601-5893691)
chr1 (342-393)||(5893493-5893544)
chr1 (19-64)||(5893820-5893865)
[»] chr8 (1 HSPs)
chr8 (343-393)||(1947157-1947207)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 5893691 - 5893601
Alignment:
Q  195 taattgaacttgagtcctcgatcgaagaagcaaacggttccatcatcaaaaccagttaccactttaccccttccactcgaacaacactcga 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5893691 taattgaacttgagtcctcgatcgaagaagcaaacggttccatcatcaaaaccagttaccactttaccccttccactcgaacaacactcga 5893601  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 5893544 - 5893493
Alignment:
Q  342 ggaattgtgcattttgcaacgtacttctcctcgaagaattcgaacttccgcc 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5893544 ggaattgtgcattttgcaacgtacttctcctcgaagaattcgaacttccgcc 5893493  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 5893865 - 5893820
Alignment:
Q  19 cccacgtccccaaatcaatgttcatcctcaaaacctattcatcaag 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5893865 cccacgtccccaaatcaatgttcatcctcaaaacctattcatcaag 5893820  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 1947207 - 1947157
Alignment:
Q  343 gaattgtgcattttgcaacgtacttctcctcgaagaattcgaacttccgcc 393  Q
    |||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||    
T  1947207 gaattgtgcattttgcaaagtacttctcatcgaagatttcaaactttcgcc 1947157  T

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