View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_high_31 (Length: 389)
Name: NF16632_high_31
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 10233338 - 10232966
Alignment:
| Q |
4 |
tttgcgatgctttttcctggtagttgtaacggaggtggtgtcacataggtgaaattcttggacgagattcagcgcaatgtgttctttttatttctggtgg |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
10233338 |
tttgcgaggctttttcctggtagttgtaacggaggtggtgtcgcataggtgaaattcttggacgagattaagcgcaatgtgttctttttatttatggtgg |
10233239 |
T |
|
| Q |
104 |
tgatataatttaaaccatgccattaaattgagattttgtgtaagtttttgacttaaatctgatgtcaatgaatcctaactcatttaaaaaatcagtgcat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10233238 |
tgatataatttaaaccatgccattaaattgagattttgtgtaagtttttgacttaaatctgatgtcaatgaatagtaactcatttaaaaaatcagtgcat |
10233139 |
T |
|
| Q |
204 |
atgtatgtgcaacaatgatgatgacagatgctaacgggaaacaaaatttgtcaaaaagtgtctaaatgaggaaataaacggatttgtgtaaacaaggaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10233138 |
atgtatgtgcaacaatgatgatgacagatgctaacgggaaagaaaatttgtcaaaaagtgtctaaatgaggaaataaacagatttgtgtaaacaaggaaa |
10233039 |
T |
|
| Q |
304 |
taaacggatttgaatttgaatcatctatactacctttctcttaagggaggtgagtgtaatttactctcttaga |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
10233038 |
taaacggatttgaatttgaatcatctatactacctttctcttacggaaggtgagtgtaatttactctcttaga |
10232966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 9458740 - 9458698
Alignment:
| Q |
77 |
gcaatgtgttctttttatttctggtggtgatataatttaaacc |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9458740 |
gcaatgtgttctttttatttcttgtggtgatataatttaaacc |
9458698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University