View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_38 (Length: 365)

Name: NF16632_high_38
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_38
NF16632_high_38
[»] chr5 (4 HSPs)
chr5 (1-347)||(4189761-4190106)
chr5 (1-31)||(22399862-22399892)
chr5 (4-34)||(25545313-25545343)
chr5 (2-35)||(825072-825105)
[»] chr2 (7 HSPs)
chr2 (1-43)||(44247630-44247672)
chr2 (1-35)||(16209388-16209422)
chr2 (1-35)||(33171691-33171725)
chr2 (1-35)||(37810159-37810193)
chr2 (1-35)||(42094294-42094328)
chr2 (1-35)||(42251255-42251289)
chr2 (3-35)||(18719744-18719776)
[»] chr8 (11 HSPs)
chr8 (1-48)||(13260392-13260439)
chr8 (1-35)||(20271105-20271139)
chr8 (1-35)||(21057733-21057767)
chr8 (1-35)||(34504390-34504424)
chr8 (3-33)||(35586419-35586449)
chr8 (1-35)||(36009914-36009948)
chr8 (1-35)||(42072673-42072707)
chr8 (1-34)||(2288613-2288646)
chr8 (1-38)||(40696198-40696235)
chr8 (1-41)||(42209453-42209491)
chr8 (1-33)||(26018552-26018584)
[»] chr7 (10 HSPs)
chr7 (1-35)||(2276290-2276324)
chr7 (2-35)||(49106998-49107031)
chr7 (1-33)||(29356932-29356964)
chr7 (1-31)||(3235576-3235606)
chr7 (1-35)||(3235651-3235685)
chr7 (2-31)||(7017179-7017208)
chr7 (2-31)||(7032537-7032566)
chr7 (1-34)||(18089794-18089827)
chr7 (1-34)||(26862927-26862960)
chr7 (1-34)||(46074147-46074180)
[»] chr4 (9 HSPs)
chr4 (1-35)||(7403175-7403209)
chr4 (1-35)||(21433886-21433920)
chr4 (1-35)||(33414016-33414050)
chr4 (1-34)||(16457934-16457967)
chr4 (1-35)||(3688663-3688697)
chr4 (1-35)||(19382310-19382344)
chr4 (1-35)||(21433965-21433999)
chr4 (1-35)||(41840684-41840718)
chr4 (1-29)||(2324777-2324805)
[»] chr3 (10 HSPs)
chr3 (1-35)||(3901585-3901619)
chr3 (1-43)||(31205461-31205503)
chr3 (1-35)||(36480720-36480754)
chr3 (1-34)||(11532527-11532560)
chr3 (1-33)||(35357409-35357441)
chr3 (1-35)||(3901512-3901546)
chr3 (1-35)||(31205382-31205416)
chr3 (1-35)||(35357330-35357364)
chr3 (1-43)||(45332549-45332591)
chr3 (1-34)||(37189236-37189269)
[»] chr1 (10 HSPs)
chr1 (1-35)||(34437689-34437723)
chr1 (1-35)||(49822620-49822654)
chr1 (3-35)||(40669023-40669055)
chr1 (1-35)||(2542715-2542749)
chr1 (1-35)||(2542794-2542828)
chr1 (1-35)||(34437611-34437645)
chr1 (2-35)||(31851952-31851985)
chr1 (2-35)||(31970133-31970166)
chr1 (2-35)||(38663664-38663697)
chr1 (1-34)||(40668943-40668976)
[»] chr6 (5 HSPs)
chr6 (1-35)||(1473628-1473662)
chr6 (1-35)||(12731567-12731601)
chr6 (5-35)||(24110076-24110106)
chr6 (2-34)||(6643329-6643361)
chr6 (3-35)||(17389991-17390023)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 4190106 - 4189761
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttgctagcattcctcaattttaaatgtcttattctaattccatagcccataggtgctcttggacctca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4190106 catgtgaattttaaccaatcaaagagagtgtgttgctagcattcctcaattttaaatggcttattctaattccatagcccataggtgctcttggacctca 4190007  T
Q  101 caggatatatatgcctataaacattgagctttatctacatcacacatacgtgtcaattcaacattttagttgcaagaaatattctcttgtaaggtttgtg 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4190006 caggatatatatgcctataaacattgagctttatcttcatcacacatacgtgtcaattcaacattttagttgcaagaaatattctcttgtaaggtttgtg 4189907  T
Q  201 tgtcacccaaattaaaaagaaagagtgaataataactttttcttatcttttctactatctatatatccatcacagaacaaaacttccattgctctgttct 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4189906 tgtcacccaaattaaaaagaaatagtgaataataactttttcttatcttttctactatctatatatccatcacagaacaaaacttccattgctctgttct 4189807  T
Q  301 gtttctgtttctctttgttctccctcgtgtaacaatggcattcacac 347  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||    
T  4189806 g-ttctgtttctctttcttctccctcgtgtaacaatggcattcacac 4189761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 22399862 - 22399892
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  22399862 catgtgaattttaaccaatcaaagagagtgt 22399892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 25545313 - 25545343
Alignment:
Q  4 gtgaattttaaccaatcaaagagagtgtgtt 34  Q
    |||||||||||||||||||||||||||||||    
T  25545313 gtgaattttaaccaatcaaagagagtgtgtt 25545343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 825105 - 825072
Alignment:
Q  2 atgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||| |||||||||||    
T  825105 atgtgaattttaaccaatcaaatagagtgtgttg 825072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44247630 - 44247672
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttgctagcatt 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44247630 catgtgaattttaaccaatcaaagagagtgtgttgctagcatt 44247672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16209422 - 16209388
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  16209422 catgtgaattttaaccaattaaagagagtgtgttg 16209388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33171691 - 33171725
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  33171691 catgtgaaatttaaccaatcaaagagagtgtgttg 33171725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37810193 - 37810159
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  37810193 catgtgaattataaccaatcaaagagagtgtgttg 37810159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42094294 - 42094328
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  42094294 catgtgaattttaaccaatcaaagagtgtgtgttg 42094328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42251255 - 42251289
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  42251255 catgtgaattttaatcaatcaaagagagtgtgttg 42251289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 18719776 - 18719744
Alignment:
Q  3 tgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||| |||||||||||    
T  18719776 tgtgaattttaaccaatcaaaaagagtgtgttg 18719744  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13260439 - 13260392
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttgctagcattcctca 48  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  13260439 catgtgcattttaaccaataaaagatagtgtgttgctagcattcctca 13260392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20271105 - 20271139
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  20271105 catgtgaattttaactaatcaaagagagtgtgttg 20271139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21057733 - 21057767
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  21057733 catgtgaattttaactaatcaaagagagtgtgttg 21057767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34504424 - 34504390
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  34504424 catgtgaattttaaccaatcaaaaagagtgtgttg 34504390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 35586449 - 35586419
Alignment:
Q  3 tgtgaattttaaccaatcaaagagagtgtgt 33  Q
    |||||||||||||||||||||||||||||||    
T  35586449 tgtgaattttaaccaatcaaagagagtgtgt 35586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36009914 - 36009948
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  36009914 catgtgaattttaaccaaccaaagagagtgtgttg 36009948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42072707 - 42072673
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  42072707 catgtgaatgttaaccaatcaaagagagtgtgttg 42072673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2288646 - 2288613
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  2288646 catgtaaattttaaccaatcaaagagagtgtgtt 2288613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40696235 - 40696198
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttgcta 38  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  40696235 catgtgaattttaactaatcaaaaagagtgtgttgcta 40696198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42209453 - 42209491
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttgctagca 41  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  42209453 catgtgaattttaaccaatcaa--agagtgtgttgctagca 42209491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26018552 - 26018584
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgt 33  Q
    |||||||||||||||||||||| ||||||||||    
T  26018552 catgtgaattttaaccaatcaaggagagtgtgt 26018584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2276324 - 2276290
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2276324 catgtgaattttaaccaatcaaagagagtgtgttg 2276290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 49106998 - 49107031
Alignment:
Q  2 atgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||||||||||||||    
T  49106998 atgtgaattttaaccaatcaaagagagtgtgttg 49107031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29356964 - 29356932
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgt 33  Q
    |||||||||||||||||||||||||||||||||    
T  29356964 catgtgaattttaaccaatcaaagagagtgtgt 29356932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3235606 - 3235576
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  3235606 catgtgaattttaaccaatcaaagagagtgt 3235576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3235651 - 3235685
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  3235651 catgtgaattttaaccaatcaaaaagagtgtgttg 3235685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 7017179 - 7017208
Alignment:
Q  2 atgtgaattttaaccaatcaaagagagtgt 31  Q
    ||||||||||||||||||||||||||||||    
T  7017179 atgtgaattttaaccaatcaaagagagtgt 7017208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 7032537 - 7032566
Alignment:
Q  2 atgtgaattttaaccaatcaaagagagtgt 31  Q
    ||||||||||||||||||||||||||||||    
T  7032537 atgtgaattttaaccaatcaaagagagtgt 7032566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18089794 - 18089827
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    |||||||||||||||||| |||||||||||||||    
T  18089794 catgtgaattttaaccaaccaaagagagtgtgtt 18089827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26862960 - 26862927
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    |||||||||||||||||||||| |||||||||||    
T  26862960 catgtgaattttaaccaatcaaggagagtgtgtt 26862927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 46074147 - 46074180
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  46074147 catgtgaattttaaccaattaaagagagtgtgtt 46074180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7403175 - 7403209
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  7403175 catgtgaattttaaccaatcaaagagagtgtgttg 7403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21433920 - 21433886
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21433920 catgtgaattttaaccaatcaaagagagtgtgttg 21433886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33414050 - 33414016
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  33414050 catgtgaattttaaccaatcaaagagagtgtgttg 33414016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16457967 - 16457934
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  16457967 catgtgaattttaaccaatcaaagagagtgtgtt 16457934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3688663 - 3688697
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  3688663 catgtgaattttaaccaatcaaagaaagtgtgttg 3688697  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19382344 - 19382310
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  19382344 catgtgaattttaaccaatcaaatagagtgtgttg 19382310  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21433965 - 21433999
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||| ||||||||||||    
T  21433965 catgtgaattttaaccaatcaatgagagtgtgttg 21433999  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 41840684 - 41840718
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  41840684 catgtgaattttaaccaatcaaatagagtgtgttg 41840718  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2324805 - 2324777
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagt 29  Q
    |||||||||||||||||||||||||||||    
T  2324805 catgtgaattttaaccaatcaaagagagt 2324777  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3901585 - 3901619
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3901585 catgtgaattttaaccaatcaaagagagtgtgttg 3901619  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31205461 - 31205503
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttgctagcatt 43  Q
    |||||||||||| |||||||||||||||||||||||| |||||    
T  31205461 catgtgaattttgaccaatcaaagagagtgtgttgcttgcatt 31205503  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36480754 - 36480720
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36480754 catgtgaattttaaccaatcaaagagagtgtgttg 36480720  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11532527 - 11532560
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  11532527 catgtgaattttaaccaatcaaagagagtgtgtt 11532560  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35357409 - 35357441
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgt 33  Q
    |||||||||||||||||||||||||||||||||    
T  35357409 catgtgaattttaaccaatcaaagagagtgtgt 35357441  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3901546 - 3901512
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  3901546 catgtgaattttaaccaatcaaagagaatgtgttg 3901512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31205416 - 31205382
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  31205416 catgtaaattttaaccaatcaaagagagtgtgttg 31205382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35357364 - 35357330
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  35357364 catgtgagttttaaccaatcaaagagagtgtgttg 35357330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45332591 - 45332549
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttgctagcatt 43  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||    
T  45332591 catgtgaattttaaccaattaaagaaagtgtgttgctaccatt 45332549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37189236 - 37189269
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  37189236 catgtgaattttaaccaatcaaagagagtctgtt 37189269  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34437689 - 34437723
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  34437689 catgtgaattttaaccaatcaaagagagtgtgttg 34437723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49822620 - 49822654
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  49822620 catgtgaattttaaccaatcaaagagagtgtgttg 49822654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 40669023 - 40669055
Alignment:
Q  3 tgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||||    
T  40669023 tgtgaattttaaccaatcaaagagagtgtgttg 40669055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2542749 - 2542715
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  2542749 catgtaaattttaaccaatcaaagagagtgtgttg 2542715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2542794 - 2542828
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  2542794 catgtgaattttaaccaatcaaagagaatgtgttg 2542828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34437645 - 34437611
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  34437645 catgtgaattttaaccaatcaaagagagtttgttg 34437611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 31851952 - 31851985
Alignment:
Q  2 atgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||| |||||||||||||||||||    
T  31851952 atgtgaattttaacaaatcaaagagagtgtgttg 31851985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 31970166 - 31970133
Alignment:
Q  2 atgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||| |||||||||||    
T  31970166 atgtgaattttaaccaatcaaaaagagtgtgttg 31970133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 38663697 - 38663664
Alignment:
Q  2 atgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||| ||||||||||||||||||||||||    
T  38663697 atgtgaattgtaaccaatcaaagagagtgtgttg 38663664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40668976 - 40668943
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  40668976 catgtgagttttaaccaatcaaagagagtgtgtt 40668943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1473662 - 1473628
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  1473662 catgtgaattttaaccaatcaaagatagtgtgttg 1473628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12731601 - 12731567
Alignment:
Q  1 catgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  12731601 catgtgaattttaaccaatcaaagagaatgtgttg 12731567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 24110106 - 24110076
Alignment:
Q  5 tgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||||||||    
T  24110106 tgaattttaaccaatcaaagagagtgtgttg 24110076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 6643361 - 6643329
Alignment:
Q  2 atgtgaattttaaccaatcaaagagagtgtgtt 34  Q
    ||||||||||||||||||||| |||||||||||    
T  6643361 atgtgaattttaaccaatcaatgagagtgtgtt 6643329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 17389991 - 17390023
Alignment:
Q  3 tgtgaattttaaccaatcaaagagagtgtgttg 35  Q
    |||||||||||||||||||||||||| ||||||    
T  17389991 tgtgaattttaaccaatcaaagagagagtgttg 17390023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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