View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_high_39 (Length: 363)
Name: NF16632_high_39
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 40 - 354
Target Start/End: Complemental strand, 5198265 - 5197949
Alignment:
| Q |
40 |
tggtttcatttaaatctcataactatttttattcaattttagtcccttaactttacgtaattttaagttgatctttttcattagttttccgaagaaagaa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
5198265 |
tggtttcatttaaatctcataactatttttattcaattttagtcctttaactttacgtaatttcaagttggtctttttcattagtttttcgaagaaagaa |
5198166 |
T |
|
| Q |
140 |
aaaa-ccgttgatttatgcacatgtgaaattttgattagctgaaaactaaatctccttctccagaattaggttcttcaacttatatttatctatttcata |
238 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198165 |
aaaaaccgttgacttatgcacatgtgaaattttgattagctgaaaactaaatctccttcttcagaattaggttcttcaacttatatttatctatttcata |
5198066 |
T |
|
| Q |
239 |
atactatgtttgtacaaaatctgtctaaagacaaattaacaaaaaacttctatttcattactcaatctatcgtttcacaaaag--tgtttttcttatatg |
336 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5198065 |
atactatgattgtacaaaatctgtctaaagacaaattaaca-aaaacttctatttcattactcaatctatcgtttcacaaaagtatgtttttcttatatg |
5197967 |
T |
|
| Q |
337 |
aacgacatatagtattat |
354 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5197966 |
aacgacatatagtattat |
5197949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 5198381 - 5198275
Alignment:
| Q |
21 |
agtttcttaacttcttttgtggtttcatttaaatctcataactatttttattcaattttagtcccttaactttacgtaattttaagttgatctttttcat |
120 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| || ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
5198381 |
agtttcttaacttcttctgtggtttcatttaaatctcataactatttttgttccattttagccctttagctttacgtaattttaagttggtctttttcat |
5198282 |
T |
|
| Q |
121 |
tagtttt |
127 |
Q |
| |
|
||||||| |
|
|
| T |
5198281 |
tagtttt |
5198275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University